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2.0.0+66beafa (Released 2024-4-5)

  • Additions:
    • [#66beafa] update prerelease mechanism
    • [#3a5c89a] Merge pull request #337 from nfdi4plants/ToStringOverrides
    • [#98c5228] Add ToString overrides for study/investigation
    • [#9ebd796] Merge pull request #336 from nfdi4plants/xlsxcontroller
    • [#6b52004] Finalize io controller types for fable ✨
    • [#0ff28ab] rmv old code 🔥
    • [#a08d8fd] Merge pull request #335 from nfdi4plants/oa_equality
    • [#754cac7] Rename to toStringObject
    • [#98efaa0] add README.md reference to setup.cmd
    • [#d893131] Simplify OntologyAnnotation hashcode and equality ✅
    • [#7d6c107] Add setup script for windows 👷
    • [#fbe7265] Merge pull request #330 from nfdi4plants/arctrl_rework
    • [#232dae3] set test with umlauten pending for python
    • [#c15a2e5] Add ro-crate write tests ✅
    • [#7340910] add some more schema validation tests
    • [#fc8f63e] add native python tests ✅
    • [#e3512c7] Make js native tests pass ✔️
    • [#8d50567] update github CI
    • [#18012b3] rmv leftover folder 🔥
    • [#89f976c] Finish json (for now 🚧)
    • [#5803eb7] start reworking tests for js and py
    • [#766d46a] move ARCtrl contract tests to Contract test project
    • [#3f35262] move template json tests to json test project
    • [#4fc4a07] more work on json 🚧
    • [#cb5da3a] reduce test spreadsheet metadata matching reduction of parser logic
    • [#c885111] More work on json tests 🚧
    • [#adac51c] Add custom ToString for OntologyAnnotation 🎨
    • [#c193629] Start working on tests 🚧
    • [#5f6c65b] distribute template across appropriate projects
    • [#8af7487] Add fable json import type #324 #285
    • [#e3437b2] add ARC RO-Crate serialization
    • [#4cd6d63] finish investigation ro-crate
    • [#39fe3cf] finish moving template json ✨
    • [#c25748a] Finish compressed json logic ✨
    • [#04b097b] Start moving Arc Json logic 🚧
    • [#e710c5a] rework ARCAssay and ArcStudy ISAJson serialization
    • [#437bca3] rework ROCrate process serialization
    • [#19b849a] Start with component logic rework 🚧
    • [#f24259e] finish up ISA-JSON conversion for process types ✨
    • [#a51bfcc] Finish json table logic ✨
    • [#6b670d9] Finish json for shared types ✨
    • [#a29a7f9] start reworking arctrl.json process serialization
    • [#5150773] Start workin on new Json API layer 🚧
    • [#f65d414] start reworking ARCtrl.json project
    • [#b568074] rework ARCtrl.Spreadsheet according to datamodel changes
    • [#2cb9db8] rework ARCtrl.Core types to improve transpiled javascript
    • [#b282dc3] restructure ARCtrl.Core (former ARCtrl.ISA) project
    • [#90520bd] restructure project
    • [#ceefce8] move all filesystem information into filesystem project
    • [#4b2b78f] move UIHelper function into compositecell
    • [#dd69b1f] add addtionalType to ProcessParameterValue
    • [#3bf2a83] WIP 🚧
    • [#f7beae7] Updated tests for jsonld readers. Investigation test still wip.
    • [#d8c4d0a] adapted json export tests for new ro-crate export (Investigation still open)
    • [#d1cbba9] new ro-crate export and context files
    • [#280d3b8] WIP 🚧
    • [#9983642] WIP 🚧
    • [#e7b0015] Updated tests for jsonld readers. Investigation test still wip.
    • [#1cc83f8] adapted json export tests for new ro-crate export (Investigation still open)
    • [#9b0d7b7] new ro-crate export and context files
    • [#0fb24ee] Merge pull request #325 from nfdi4plants/performanceReport
    • [#faaba01] several minor adjustments according to change request
    • [#9c32a3d] update readme with performance report and python links
    • [#9e79685] move performance report into speedtest project
    • [#27aac66] move performance report build targets and create first reports
    • [#41fef58] first draft of performanceReport target
    • [#d64e708] Merge pull request #323 from nfdi4plants/update_js_docs
    • [#1cd68ea] Update
    • [#60d575e] Merge pull request #320 from nfdi4plants/python_integration
    • [#0aefdb2] update documentation and add python docs
    • [#abd3d89] Merge pull request #317 from nfdi4plants/python_integration
    • [#b6e2eca] small change to semver in npm
  • Deletions:
    • [#f055617] remove erroneous exe output type from testingutils
  • Bugfixes:
    • [#e444944] fix non utf8 json output #334
    • [#025734d] rmv code circumventing fable python bug 🔥
    • [#9f570b3] fix OntologyAnnotation Hashcodes 🐛
    • [#b84919f] Fix json tests ✔️
    • [#d68348e] hotfix js schema validation in tests
    • [#2a999e8] Fix all warnings by burning unused fable reflection helpers 🔥
    • [#562ce65] Fix test tasks still using mocha
    • [#b15a377] fix json parsing DateTime issues
    • [#d5eae8d] several python test fixes
    • [#451ef11] move and fix template hashcode and equality tests
    • [#9da88fe] Template fixes against json and core tests
    • [#97c433e] move and fix spreadsheet Template tests
    • [#fbaa958] fix component name conversion
    • [#6c9123e] fix arctrl.core tests and equality of reworked objects
    • [#da18342] fix rocrate sample and protocol handling
    • [#4b5af05] fix rocrate assay serialization
    • [#cd69fc3] fix wrong encoder/decoder calls ✨
    • [#e053cd9] fix arctrl.core tests
    • [#996ae0e] fix multiple issues with ro-crate json encoding 🐛
    • [#5b0adba] Added fromJsonldString for all ISA-JSON types. Also fixed some bugs.
    • [#2c74476] fix build chain for linux
    • [#295af00] fix tests 🐛

1.2.0+19d850e (Released 2024-3-8)

  • Additions:
    • Added Python compatability
    • [#19d850e] several small cleanups according to PR #317 comments
    • [#8becc67] update build project for releasing python package
    • [#df663cb] include python setup in CI
    • [#66b83a2] several small changes to test stack
    • [#3dfaad7] adjustments to web and validation to allowe for python transpilation
    • [#688c628] work on json io support in python
    • [#93b6d94] replace mocha and expecto with pyxpecto
    • [#aa30389] move json schema validation to json tests
    • [#f0bb78d] switch towards using .venv for running transpiled python
    • [#2d35cfb] update Fable and pyxpecto
    • [#32a4128] add hashcode tests
    • [#cc8c116] increase json write test timeout
    • [#3d00621] small adjustments in isa.json
    • [#10c5538] cleanup merge of json-ld and thoth.json
    • [#58b3d5a] merge json-ld changes into thoth.json update changes and refactor
    • [#87ab15d] increase json parsing test timeout
    • [#90c60b9] rework json encoding
    • [#c482c86] finish thoth conversion
    • [#d0a99a3] start reworking json towards net Thoth.Json
    • [#4f77082] Merge pull request #271 from nfdi4plants/jsonld
    • [#3f84e17] increase speed of ARC to Json Type conversion
    • [#5ceb732] bump to 1.1.0
  • Bugfixes:

1.1.0+6309e03 (Released 2024-2-15)

  • Additions:
    • [#544ffdc] add some additional information to failing spreadsheet parsers #306
    • [#ee67104] create first version of compressed arctable json exporter
    • [#8b36c55] implement stringtable in arctable json compression
    • [#bb98bf4] add compressed study and assay json encoders
    • [#6c5aa85] add tests for compressed json
    • [#689f60c] add more efficient compressed column encoding
    • [#a9fbdf6] add rangeEncoding to compressed json
    • [#8635d76] Improve speed of GetHashCode
    • [#ed0e78e] add GetUpdateContracts functionality
    • [#73ed27e] small clarification on getUpdateContracts
    • [#787368e] reinclude fable reference in isa.json.fsproj
  • Deletions:
    • [#f87b4b6] removed unused self reference in assay and study constructors
  • Bugfixes:
    • [#c619cd9] small fix to compressed arcTable json
    • [#9d3392d] add update contract tests and fix against them

1.0.7+14c14a9 (Released 2024-1-30)

  • Additions:
    • [#14c14a9] update FsSpreadsheet reference
    • [#1d8d7b7] small changes to fillmissing and performance tests
    • [#68c65d0] improve design of speed tests
    • [#d592cf3] small speed increase of setCell
    • [#38fe3a9] rework fillMissing
    • [#ddb8238] improve speed of ArcTable.AddRows
  • Bugfixes:

1.0.6+c6d86b1 (Released 2024-1-26)

  • Additions:
    • [#c6d86b1] small performance improvement for reading ARCs
    • [#3f8c788] add case for speedtest project
    • [#a90a1f1] improve and test speed of investigation file writer
    • [#123f209] Merge pull request #299 from nfdi4plants/small_cleanup
    • [#70d3c85] Merge pull request #297 from nfdi4plants/table_join_296
    • [#13428ca] Revert unintended change in default!
    • [#66b15f6] Update to v1.0.5
  • Deletions:
    • [#d121e5c] remove playground and move speedtest folders

1.0.5+b21e3bc (Released 2024-1-17)

  • Additions:
    • [#b21e3bc] Extend ArcTable.Join ✨✅
    • [#a112468] Update readme badge
    • [#a0144e1] Merge pull request #295 from nfdi4plants/Freymaurer-patch-1
    • [#9e5c1f6] Update README.md
    • [#6e0755b] update and release version 1.0.4
  • Bugfixes:
    • [#8dd99e8] Merge pull request #294 from nfdi4plants/fix_annotationValue_read

1.0.4+167fae8 (Released 2024-1-15)

  • Additions:
    • [#167fae8] add json functions for better function names in js ✨

1.0.3+533dab0 (Released 2024-1-15)

  • Additions:
    • [#208839a] change annotationValue of Ontology Annotation to string
    • [#533dab0] Add tests for edgecase ✅
  • Bugfixes:
    • [#d42faaf] Fix template read issue. annotationvalue not correctly read 🐛

1.0.2+533dab0 (Released 2024-1-15)

  • Additions:
    • [#cc7f35f] add speedtest and make some small experimental changes
    • [#e85dba4] make some validation and checks optional for speed improvements
    • [#208839a] change annotationValue of Ontology Annotation to string
    • [#a1921ef] make fillmissingcells optional for addcolumns
    • [#2aca309] Make ArcStudy IO performance test more strict

1.0.1+5576d43 (Released 2023-12-21)

1.0.0+b42bd6f (Released 2023-12-21)

  • Additions:
    • Complete overhaul of the API.
    • Shifted focus from only ISA to include full ARC.
    • Included Fable compilation to Javascript as first citizen design principles.
    • No direct filesystem access but contract based IO, which allows language agnostic IO.

0.7.0+ac83329 (Released 2023-1-26)

  • Additions:
    • latest commit #ac83329
    • [#ac83329] impove QNode usability with documentation

0.6.1+7de6163 (Released 2022-12-7)

  • Additions:
    • latest commit #7de6163
    • [#477edad] Renamed src/ISADotnet to src/ISADotNet for linux build due to file name case sensitivity.
    • [#325cb91] add json schema validation functions
    • [#94ef9e5] add isFatal check to json schema validation
    • [#d496857] ease constraints of json schema validation
    • [#7db8fae] validate json against json schema from HLWeil fork
    • [#fdf248d] move jsonSchemaValidation in its own Repo
    • [#5f133db] update dotnet version in cli
    • [#8531aac] add unit retrieval functions to API
    • [#372e07f] rename xlsx metadata headers nfdi4plants/ARCCommander#150
  • Bugfixes:
    • [#168890f] fix json schema validation use njonschema instead
    • [#9c66fa8] fix json test files to actually adhere to json schema
    • [#d79605c] fix datamodel according to json schema validation
    • [#8f63206] fix study xlsx reader creating empty lists #71
    • [#6d5ee0c] make DAG creation more robust against missing names fix #51

0.6.0+2150bc9 (Released 2022-9-7)

  • Additions:
    • latest commit #2150bc9
    • harmonize xlsx IO with Swate 0.6.0 release
    • add OBO ontology IO
    • extend ontological reasoning
    • extend components and protocol types
    • [#118f404] add simple ontological reasoning for protocol type
    • [#bdf85b2] adjust assay xlsx header renumbering
    • [#59cfdaf] small improvements to Ontology Annotation and Component type
    • [#94b6059] drop protocol rowIndex when calculating rowRange
    • [#4c050d1] revert term accession number changes
    • [#f8f94c6] add components to querymodel and assay xlsx writing
    • [#9b85296] add protocol type and protocol ref to assay and study xlsx writing
    • [#9cb34af] add component to querymodel
    • [#1c66f1f] refactor return values of assay and study xlsx file readers
    • [#1a981e9] add component and protocoltype parsers to assay xlsx table reader
    • [#75afe60] add component and protocol type parser functions
    • [#084cee1] add component casting functions
    • [#ba490a3] added inline documentation for querymodel methods
    • [#f2e05eb] improve Querymodel documentation
    • [#6eb5c44] add additional ontology helper functions to querymodel
    • [#11ef6b8] add ontology search functions
    • [#99e3ebb] add isA and xref search on oboOntology
    • [#af680ec] integrate OBO IO and reasoning
    • [#5ff98d8] extend querymodel by basic ontology logic guided querying
  • Bugfixes:
    • [#4b99f26] fix ontologyannotation equality for empty objects
    • [#e6966aa] fix json parsing
    • [#d4987fe] fix assay and study file reading tables
    • [#f9bd7f4] fix component json parsing
    • [#86e1b46] fix assay file writing issues #62 #63 #64
    • [#7385792] fix study and assay xlsx write error

0.5.4+262f787 (Released 2022-7-12)

  • Additions:
    • latest commit #262f787
    • [#262f787] improve Querymodel by adding Protocol specific functions
    • [#60e189f] add basic ontology reasoning to QueryModel
    • [#1ba8b0c] move Querymodel into own project

0.5.3+dc96afe (Released 2022-6-29)

  • Additions:
    • latest commit #dc96afe
    • [#3b4eec6] add metadata sheets to assay and study xlsx writing
    • [#dc96afe] add QInvestigation to querymodel

0.5.2+43177ae (Released 2022-6-24)

  • Additions:
    • latest commit #43177ae
    • [#20b36d5] update readme with querymodel examples
    • [#6640826] add assay xlsx file writer
    • [#113767c] finish up assay xlsx file writer

0.5.1+af3dc20 (Released 2022-6-15)

  • Additions:
    • latest commit #af3dc20
  • Bugfixes:
    • [#af3dc20] fix querymodel node updating

0.5.0+0646fa9 (Released 2022-6-15)

  • Additions:
    • latest commit #0646fa9
    • QueryModel
    • Increase verbosity
    • Fixes
    • [#8701a22] add additional methods to QueryModel
    • [#be34819] add study type to query model
    • [#8b7f1c7] improve query model value retrieval
    • [#ba81b27] add Query model capabilities
    • [#a6470f1] add QProcessSequence type for QueryModel
    • [#2a9613d] small improvement to assay xlsx reading error messaging
    • [#97406b5] Add regex unit tests ✅
    • [#0404cbf] Increase flexibility of regex
    • [#d04650f] move ValueIndex file from ISADotNet.XLSX into ISADotNet
    • [#9787518] rework Assay query model
    • [#19cb0f6] adjust assay file header parsing -can now parse brackets inside brackets -now ignores numbers
    • [#06f1078] increase assay file io fail safety
    • [#74b5b0f] increase xlsx IO verbosity
    • [#b3a0a64] include empty study by default when writing investigation file
    • [#314acc0] extend assay query model methods
    • [#372d5d9] start working on assay query model
    • [#e8e0175] add study xlsx file io
    • [#5e27192] switch to FsSpreadsheet for ExcelIO
    • [#8c788d7] add Process IO functions
    • [#269ce79] assay xlsx file reader always assumes data type for data column
    • [#4105894] add Assay Metadatasheet manipulation functions
  • Deletions:
    • [#476105e] temporarily remove linux CI to avoid spam #38 this should definitely be looked into again at a later point
  • Bugfixes:
    • [#566115d] fix assay metadatasheet not being read correctly
    • [#f343175] dag vizualization now makes edges distinct per source target pair quick fix for #52
    • [#d1c671d] fix outputByCharacterstic getter function fixes #50
    • [#2101589] fix assay reading no processes as Some empty lists fixes #54

0.4.0+2a9311b (Released 2021-10-22)

  • Additions:
    • latest commit #2a9311b
    • [#2a9311b] finalize first DAG visualization draft ✨
    • [#e5ad37a] assign characterstics from assay.xlsx files only to inputs #43
    • [#eb985e3] create first DAG creation function
    • [#a9eddd6] add schema type for DAG
    • [#f60edbd] adjust xlsx io to FSharpSpreadsheetML 0.0.7
    • [#2147cb9] prepare assay xlsx file io for FABLE compatability
    • [#78a667c] add helper methods for assay file value ordering
    • [#ea12093] adjust investigation.xlsx file io for FABLE compatabiity
    • [#9c52b6c] make assay.xlsx file reader save value column ordering
    • [#0b8e26e] add helper functions for assayFile Column Ordering
    • [#e1d1f1a] use old formatted printing for compatibility in ISADotNet.XLSX
    • [#ac15be6] use old formatted printing for compatibility
    • [#c80ec0a] Add check to exclude whitespaces from being valid values (Issue #37).
    • [#0847b38] init ISADotNet.Viz
  • Bugfixes:
    • [#3fd7fca] several fixes for xlsx io
    • [#edeed88] Update tan issue fix (Issue #35).
    • [#20cff8c] Update worksheet name fix (Issue #34).
    • [#f989114] Fix wrong term accessions (Issue #35).
    • [#4f851d9] Fix worksheet naming bug in CommonAPI (Issue #34).
    • [#f88320f] fix rowMajorAssay to maintain value order

0.3.3+2da8c3a (Released 2021-9-10)

  • Additions:
    • latest commit #2da8c3a
  • Bugfixes:

0.3.2+4233b78 (Released 2021-9-9)

  • Additions:
    • latest commit #4233b78
    • [#4233b78] move SwateCustomXml datamodel to ISADotNet
    • [#f7511ad] increase function parameter consistency
    • [#249f1af] add ISA Assay Common API parser
    • [#9890b6a] Unify naming as requested (PR #31).
    • [#a48d571] Add FromStringWithNumber for ProtocolParameter (Issue #24).
    • [#b511949] add isa xlsx stream reader/writer functions
    • [#91e9ea5] Add GetName, GetNameWithNumber for xxValue DataModel (Issue #24).
    • [#035ed55] Add FromString, FromStringWithNumber for OntologyAnnotation, Factor, MaterialAttribute (Issue #24)
    • [#6f883e6] Add GetValue logic for FactorValue, MaterialAttributeValue, ProcessParameterValue (Issue #24)
    • [#01db12b] add json readers/writers

0.3.0+993781f (Released 2021-9-6)

  • Additions:
    • latest commit #993781f
    • [#993781f] small adjustment to assay.xlsx reader
    • [#81a8130] reduce protocol splitting complexity of assay.xlsx reader
    • [#700bf6d] update tests to match assay.xlsx reader changes
    • [#d65a86b] adjust assay.xlsx header parsers to new swate format

0.2.6+0fa5cb5 (Released 2021-8-25)

  • Additions:
    • latest commit #0fa5cb5
    • [#a5b970f] add pretty printer example script
  • Bugfixes:
    • [#17200f7] fix missing commas in json deserializer
    • [#24f9872] Fix Person.removeByFullName error

0.2.5+02f30a0 (Released 2021-3-26)

  • Additions:
    • latest commit #02f30a0
    • [#6c23554] add compact pretty printers
    • [#ac52305] add data column reader to assay reader
    • [#c4f6df3] add cyjs assay visualisation script
    • [#327d9eb] add assay file data column parser
    • [#f783a15] bump to 0.2.4
  • Bugfixes:
    • [#02f30a0] fix process compact printer

0.2.4+1c7ed14 (Released 2021-3-24)

  • Additions:
    • latest commit #1c7ed14
    • [#0c9b3e9] bump to 0.2.3
  • Bugfixes:
    • [#1c7ed14] fix: remove printf from assay file reader

0.2.3+3536cd3 (Released 2021-3-23)

  • Additions:
    • latest commit #3536cd3
  • Bugfixes:
    • [#3536cd3] fix assay file reader sample updating

0.2.2+83de052 (Released 2021-3-22)

  • Additions:
    • latest commit #83de052
    • [#c44316c] add process sequence convencience functions
    • [#f62e7be] make assay file parser take column header number
    • [#e2c267f] add functions for accessing numbered parameters
  • Bugfixes:
    • [#83de052] fix process filterByProtocolName

0.2.1+ae00b13 (Released 2021-3-22)

  • Additions:
    • latest commit #ae00b13
    • ISAXlsx Assay File Reader Tests
    • [#93e32c4] bump to 0.2.0
    • [#e6d53bf] rename assay file node getter functions
    • [#9b4884c] small adjustemt to assay file sample column handling
    • [#261e28a] add assay file io tests
    • [#1cc8a95] add assay file io tests
    • [#cd74341] add assay sample getter functions
    • Assay Parameters accession functions
    • [#ddab453] add additional assay parameter convenience functions
    • [#622b834] add assay factors and characteristics convenience functions
    • [#ae00b13] add parameter value parsing functions
  • Bugfixes:
    • ISAXlsx Assay File Reader Fixes
    • [#2886bb5] fix assay file reader crashing when no custom xml is present closes #18
    • [#bc848e7] fix assay file io sample merging

0.2.0+1c7c8c6 (Released 2021-3-7)

  • Additions:
    • latest commit #1c7c8c6
    • Add ISAXlsx Assay File Reader
    • [#9398ccb] add assay file io tests
    • [#9a86d09] add swate customXml parsing
    • [#7c9340b] comment Assay File IO functions and modules
    • [#2a62081] add sample alignment to assay file reader
    • [#1ba9aa9] add protocol splitting to assay file reader
    • [#50c2411] tidy up ISADotNet.XLSX library structure
    • [#dc98abe] add UpdateByExistingAppendLists option to record type updater
    • [#6cedda2] add assay file reader
    • [#0e1b990] add assayFile MetaDataReader and tests
    • [#e33517b] add assayfile process parsing functions
    • [#8de1b95] add additional assay file column parsers
    • [#803f642] add assay file parameter reading
  • Bugfixes:
    • [#3af8dcd] fix assay file parameter values being parsed incorrectly
    • [#d1e7aef] fix AssayFileReader switching table headers

0.1.1+93e1117 (Released 2021-2-17)

  • Additions:
    • latest commit #93e1117
    • [#93e1117] add assayFile init function
    • [#4c3e434] make investigation file prefixes optional
    • [#235b714] Create README.md

0.1.0+5f34043 (Released 2021-2-8)

  • Additions:
    • latest commit #5f34043
    • [#9b00412] Modernize library structure
    • [#7f126ed] Modernize library structure
    • [#400211a] Apply requested changes
    • [#a05b17e] Update global.json to "latestMajor"
    • [#23a6d87] Add --noapidocs flag to docs tasks
    • [#ad13b35] Merge pull request #9 from Freymaurer/developer
    • [#79b9bc2] Merge pull request #13 from Freymaurer/developer
    • [#5f34043] Merge pull request #14 from Freymaurer/developer
  • Bugfixes:
    • [#fa4d1c5] fix remove functions fixes #8

0.0.4+2f78a5fa (Released 2023-8-3)

  • Additions:
    • latest commit #2f78a5fa
      • Add append optional list functionality when updating record types
      • Add tests
      • Soften version constraint of FSharp.Core package dependancy

0.0.2 (Released 2023-8-3)

* Increased the minimum version of the System.Json.Text dependancy
* Minor additions to the API functions

0.0.1 (Released 2023-8-3)

* Moved Project from nfdi4Plants/ArcCommander
* Full ISA Datamodel
* Reworked API
* ISA XLSX Investigation file parser
* Added ISA Json IO