Example input files? (error: "bv is not a valid literal-keeper implementation")

[agnieszkadanek]

Hi,

Could you provide a toy example of input files that work with rlzap_build or fix the link to your dataset (as mentioned here: #3)

I tried FASTA files (as in the example below) and also text files with DNA sequences, but I always get an error: "bv is not a valid literal-keeper implementation".

$ cat r
>r
ATGCAACTGATCG
$ cat i
>i
TGCTAAAACGTA
$ ./rlzap_build -i i -r r -o o 
bv is not a valid literal-keeper implementation.
Command-line options:
  -i [ --input-file ] arg             Input file, that is, file to be indexed.
  -r [ --reference-file ] arg         Reference file.
  -A [ --alphabet ] arg (=lcp32)      Alphabet. Choices: lcp32 
  -o [ --output-file ] arg            Output file.
  -k [ --parser ] arg (=parametric)   Select a parsing strategy. Choices: 
                                      classic, automatic, parametric, 
  -L [ --look-ahead ] arg (=30)       Amount of look-ahead symbols.
  -E [ --explicit-len ] arg (=15)     Minimum length of an explicit phrase, in 
                                      symbols.
  -l [ --literal-strategy ] arg (=bv) Literal lengths datastructure 
                                      implementation. Choices: sampling .
  -M [ --max-lit ] arg (=4)           Length of end-of-phrase literal length, 
                                      in bits. Choices: 2 4 8 .
  -S [ --sample-int ] arg (=32)       Literal sampling interval size, in 
                                      elements. Choices: 16 32 48 .
  -d [ --delta-bits ] arg (=8)        Adaptive pointer length, in bits. 
                                      Choices: 2 4 8 .
  -e [ --explicit-bits ] arg (=32)    Explicit pointer length, in bits. 
                                      Choices: 32 .
  -a [ --accelerate ] arg             File containing matching stats (optional)