-
-{%- endif %}
-{%- endfor %}
-{{folder.title}}
-{{folder.description}}
-
-
+
+
+{% include head.html %}
+
+
+ {% include topnav.html search=false %}
+
-
+
+
+
+
+
+
+
+
+
+
+
+
-
+
+ The Research Data Management toolkit for Life Sciences
+Best practices and guidelines to help you make your data FAIR (Findable, Accessible, Interoperable and Reusable)
+
+
+
+
+ What can we help you find?
+
+
+
+
+
+
+
+
+ Browse all topics by
+ {%- assign sidebar = site.data.sidebars[page.sidebar] %} +
+ {%- for folder in sidebar.subitems %}
+
+
+
+ {%- endfor %}
+
+ 
+
+
+
+
+
+ {{folder.title}}
+ +{{folder.description}}
+
+
+
+
+
+ 
+
+
+
+
+
+ We welcome contributors!
+This project would not be possible without the many amazing + community contributors. RDMkit is an open community project, and you are welcome to join us! +
+
+ {% include events.html event_type="upcoming_event" title=true caption=true %}
+
+ {% include news.html caption=true title=true limit=3 %}
+
+ RDMkit in numbers
+ {%- assign contributors = site.data.CONTRIBUTORS %} + {%- for page in site.pages %} + {%- if page.contributors and page.search_exclude != true %} + {%- assign pagecontr = page.contributors | join: ", " %} + {%- if allcontrstr %} + {%- assign allcontrstr = allcontrstr | append: ", " | append: pagecontr %} + {%- else %} + {%- assign allcontrstr = allcontrstr | append: pagecontr %} + {%- endif %} + {%- endif %} + {%- endfor %} + {%- for contr in contributors %} + {%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %} + {%- endfor %} + {%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %} + {%- assign tools = site.data.tool_and_resource_list -%} +
+
+
+
+
+
+
+
+
+ {{allcontributors.size}}
+
+ Contributors
+ The force behind RDMkit
+
+
+
+
+
+
+ {%- assign national_tools = 0 %}
+ {%- assign country_pages = site.pages | where: "type", "national_resources" | where:
+ "search_exclude",
+ "false" %}
+ {%- for country_page in country_pages %}
+ {%- assign national_tools = national_tools | plus: country_page.resources.size %}
+ {%- endfor %}
+
+
+
+
+ {{tools.size | plus: national_tools }}
+
+ Tools & resources
+ Explained in the context of real world problems
+ 
+
+
+
+
+
+ {%- assign content_pages = site.pages | where: "search_exclude", "false" %}
+
+
+
+
+ {{content_pages.size}}
+
+ Pages
+ Helping you with data management
+ 
+
+
+
- {%- assign i = 1 %}
- {%- for folder in sidebar.subitems %}
- {%- if folder.title != "Data life cycle" %}
-
-
-{% include events.html event_type="upcoming_event" title="true" caption="true" %}
-
-{% include news.html caption="true" title="true" limit=3 %}
-
-
-
- {%- endif %}
- {%- endfor %}
-
-
-
-
- {{folder.title}}
-{{folder.description}}
- {%- if folder.title == "All tools and resources" or folder.title == "All training resources" or folder.title == "Tool assembly" or folder.title == "National resources"%} - - {%- else %} - -
-
- {%- assign i = i | plus:1 %}
- {%- endif %}
- -
- {%- for folderitem in folder.subitems %}
-
- {{folderitem.title}} - {%- endfor %} -
We welcome contributors!
-This project would not be possible without the many amazing community contributors. RDMkit is an open community project, and you are welcome to join us!
- - -RDMkit in numbers
-{%- assign contributors = site.data.CONTRIBUTORS %} -{%- for page in site.pages %} -{%- if page.contributors and page.search_exclude != true %} -{%- assign pagecontr = page.contributors | join: ", " %} -{%- if allcontrstr %} -{%- assign allcontrstr = allcontrstr | append: ", " | append: pagecontr %} -{%- else %} -{%- assign allcontrstr = allcontrstr | append: pagecontr %} -{%- endif %} -{%- endif %} -{%- endfor %} -{%- for contr in contributors %} -{%- assign allcontrstr = allcontrstr | append: ", " | append: contr[0] %} -{%- endfor %} -{%- assign allcontributors = allcontrstr | split: ", " | uniq | sort %} -{%- assign tools = site.data.tool_and_resource_list -%} -
-
+ {%- if site.theme_variables.back_to_top or site.theme_variables.back_to_top == nil %}
+
+ {%- endif %}
+ {% include footer.html %}
+ {% include cookie-popup.html %}
+
+
-
+
\ No newline at end of file
diff --git a/pages/all_training_resources.md b/pages/all_training_resources.md
index 0abcbe4c5..965d688d2 100644
--- a/pages/all_training_resources.md
+++ b/pages/all_training_resources.md
@@ -7,5 +7,6 @@ Overview of all training resources mentioned in RDMkit pages. This overview is a
It is recommended to add your training materials and events into the ELIXIR training registry [TeSS](https://tess.elixir-europe.org/).
+
-
-
- {{allcontributors.size}}
-
- Contributors
- The force behind RDMkit
-
-
- {%- assign national_tools = 0 %}
- {%- assign country_pages = site.pages | where: "type", "national_resources" | where: "search_exclude", "false" %}
- {%- for country_page in country_pages %}
- {%- assign national_tools = national_tools | plus: country_page.resources.size %}
- {%- endfor %}
- {{tools.size | plus: national_tools }}
-
- Tools & resources
- Explained in the context of real world problems
-
-
- {%- assign content_pages = site.pages | where: "search_exclude", "false" %}
- {{content_pages.size}}
-
- Pages
- Helping you with data management
{% include training-table-all.html %} diff --git a/pages/data_life_cycle.md b/pages/data_life_cycle.md new file mode 100644 index 000000000..c4b20d156 --- /dev/null +++ b/pages/data_life_cycle.md @@ -0,0 +1,185 @@ +--- +title: Data life cycle +--- + + +In this section, information is organised according to the stages of the research data life cycle. You will find: +- A general description and introduction of each stage. +- A list of the main considerations that need to be taken into account during each stage. +- Links to training materials related to each stage. +- Links to related data management tasks that can be performed at each stage. +- Links to a Data Stewardship Wizard for your DMP and to step-by-step instructions to make your data FAIR. + +
+
+
+
diff --git a/pages/data_life_cycle/TEMPLATE_rdm_cycle.md b/pages/data_life_cycle/TEMPLATE_rdm_cycle.md
index f15c98a94..abb9af020 100644
--- a/pages/data_life_cycle/TEMPLATE_rdm_cycle.md
+++ b/pages/data_life_cycle/TEMPLATE_rdm_cycle.md
@@ -2,6 +2,7 @@
title: -ing form of the stage name - (e.g. analysing, rather than just analyse)
contributors: []
search_exclude: true
+description:
page_id:
related_pages:
your_tasks: []
diff --git a/pages/data_life_cycle/analysing.md b/pages/data_life_cycle/analysing.md
index 0d0f58783..c3b8aa237 100644
--- a/pages/data_life_cycle/analysing.md
+++ b/pages/data_life_cycle/analysing.md
@@ -4,6 +4,7 @@ page_id: analyse
related_pages:
your_tasks: [data analysis, data organisation, storage]
contributors: [Rob Hooft, Olivier Collin, Munazah Andrabi, Flora D'Anna]
+description: How to manage the data analysis stage
training:
- name: Training in TeSS
registry: TeSS
diff --git a/pages/data_life_cycle/collecting.md b/pages/data_life_cycle/collecting.md
index 69114cce2..7d70ba6d3 100644
--- a/pages/data_life_cycle/collecting.md
+++ b/pages/data_life_cycle/collecting.md
@@ -1,6 +1,7 @@
---
title: Collecting
page_id: collect
+description: Data management at the data collection stage
related_pages:
your_tasks: [data organisation, data quality, existing data, identifiers, metadata, sensitive, storage]
contributors: [Korbinian Bösl, Siiri Fuchs, Anastasia Chasapi, Ulrike Wittig]
diff --git a/pages/data_life_cycle/planning.md b/pages/data_life_cycle/planning.md
index 4773e3b84..b65943aab 100644
--- a/pages/data_life_cycle/planning.md
+++ b/pages/data_life_cycle/planning.md
@@ -1,6 +1,7 @@
---
title: Planning
page_id: plan
+description: Introduction to data management planning
contributors: [Siiri Fuchs, Korbinian Bösl, Minna Ahokas, Federico Bianchini, Flora D'Anna]
related_pages:
your_tasks: [compliance, DMP, data protection]
diff --git a/pages/data_life_cycle/preserving.md b/pages/data_life_cycle/preserving.md
index 31a3b5509..0ce5f34f9 100644
--- a/pages/data_life_cycle/preserving.md
+++ b/pages/data_life_cycle/preserving.md
@@ -1,6 +1,7 @@
---
title: Preserving
page_id: preserve
+description: Introduction to data preservation
contributors: [Siiri Fuchs, Korbinian Bösl, Anastasia Chasapi, Flora D'Anna]
related_pages:
your_tasks: [data organisation, data protection, data publication, transfer, metadata, storage]
diff --git a/pages/data_life_cycle/processing.md b/pages/data_life_cycle/processing.md
index 703eebed1..992b5bc75 100644
--- a/pages/data_life_cycle/processing.md
+++ b/pages/data_life_cycle/processing.md
@@ -1,6 +1,7 @@
---
title: Processing
page_id: process
+description: How to manage the data processing stage
contributors: [Rob Hooft, Munazah Andrabi]
related_pages:
your_tasks: [data analysis, data organisation, data quality, sensitive]
diff --git a/pages/data_life_cycle/reusing.md b/pages/data_life_cycle/reusing.md
index b18bad704..4d6971f61 100644
--- a/pages/data_life_cycle/reusing.md
+++ b/pages/data_life_cycle/reusing.md
@@ -1,6 +1,7 @@
---
title: Reusing
page_id: reuse
+description: Introduction to data reuse
contributors: [Korbinian Bösl, Daniel Faria, Markus Englund]
related_pages:
your_tasks: [data analysis, transfer, existing data, identifiers, licensing]
diff --git a/pages/data_life_cycle/sharing.md b/pages/data_life_cycle/sharing.md
index e48d3247e..2a619de73 100644
--- a/pages/data_life_cycle/sharing.md
+++ b/pages/data_life_cycle/sharing.md
@@ -1,6 +1,7 @@
---
title: Sharing
page_id: share
+description: Introduction to data sharing
contributors: [Flora D'Anna, Bert Droesbeke, Niclas Jareborg, Ulrike Wittig]
related_pages:
your_tasks: [data protection, data brokering, data publication, transfer, identifiers, licensing, metadata, sensitive, storage]
diff --git a/pages/national_resources/TEMPLATE_resources.md b/pages/national_resources/TEMPLATE_resources.md
index 588dc4c1e..7f5423f42 100644
--- a/pages/national_resources/TEMPLATE_resources.md
+++ b/pages/national_resources/TEMPLATE_resources.md
@@ -2,6 +2,7 @@
title:
search_exclude: true
+description:
country_code:
contributors: []
coordinators: []
diff --git a/pages/tool_assembly.md b/pages/tool_assembly.md
index 4d9069bd0..31dd34653 100644
--- a/pages/tool_assembly.md
+++ b/pages/tool_assembly.md
@@ -5,4 +5,4 @@ search_exclude: true
Tool Assemblies are examples of combining tools to cover data management tasks across several stages of the data life cycle. These can be tools that one or several communities combine to support RDM that can be picked up or accessed and used by others. The assemblies are aimed for users in a specific location and/or for users within a specific domain.
-{% include section-navigation-tiles.html type="tool_assembly" affiliations="true" search="true" %}
+{% include section-navigation-tiles.html type="tool_assembly" affiliations="true" search=true %}
diff --git a/pages/your_domain.md b/pages/your_domain.md
new file mode 100644
index 000000000..82e1e31bf
--- /dev/null
+++ b/pages/your_domain.md
@@ -0,0 +1,17 @@
+---
+title: Your domain
+---
+
+In this section, information is organised based on different domains in life sciences with different approaches on how they manage their data. You will find:
+- Domain-specific best practices and guidelines for data management.
+- A description of domain-specific data management challenges, considerations to be taken into account and solutions used by the community to address the challenges.
+- Links to domain-specific training materials.
+- Links to tool assemblies implemented by the communities to address specific data management challenges.
+- Links to a Data Stewardship Wizard for your DMP and to step-by-step instructions to make your data FAIR.
+- A summary table of the relevant tools and resources for the specific domain, recommended by the community.
+
+
+
+{% include section-navigation-tiles.html type="your_domain" search=true %}
+
+
diff --git a/pages/your_domain/TEMPLATE_your_domain.md b/pages/your_domain/TEMPLATE_your_domain.md
index 16f3d4256..a7678909a 100644
--- a/pages/your_domain/TEMPLATE_your_domain.md
+++ b/pages/your_domain/TEMPLATE_your_domain.md
@@ -1,6 +1,7 @@
---
title: Domain page title
search_exclude: true
+description:
contributors: []
page_id:
related_pages:
diff --git a/pages/your_domain/bioimaging_data.md b/pages/your_domain/bioimaging_data.md
index 1acae588a..c9fac5476 100644
--- a/pages/your_domain/bioimaging_data.md
+++ b/pages/your_domain/bioimaging_data.md
@@ -1,5 +1,6 @@
---
title: Bioimaging data
+description: Data management solutions for bioimaging data
contributors: [Sébastien Besson, Jean-Marie Burel, Susanne Kunis, Josh Moore, Stefanie Weidtkamp-Peters]
page_id: bioimaging data
related_pages:
diff --git a/pages/your_domain/biomolecular_simulation_data.md b/pages/your_domain/biomolecular_simulation_data.md
index 8a3b35cf8..0018be6f4 100644
--- a/pages/your_domain/biomolecular_simulation_data.md
+++ b/pages/your_domain/biomolecular_simulation_data.md
@@ -1,6 +1,7 @@
---
title: Biomolecular simulation data
page_id: biomol sim
+description: Data management solutions for biomolecular simulation data
contributors: [Karel Berka, Adam Hospital]
related_pages:
your_tasks: [data publication, metadata, storage]
diff --git a/pages/your_domain/epitranscriptome_data.md b/pages/your_domain/epitranscriptome_data.md
index ff35542b3..54f21f25c 100644
--- a/pages/your_domain/epitranscriptome_data.md
+++ b/pages/your_domain/epitranscriptome_data.md
@@ -1,5 +1,6 @@
---
title: Epitranscriptome data
+description: Data management solutions for epitranscriptome data
contributors: [Ernesto Picardi, Laura Portell Silva]
page_id: epitrans
related_pages:
diff --git a/pages/your_domain/human_data.md b/pages/your_domain/human_data.md
index 212af8780..caafa0fcd 100644
--- a/pages/your_domain/human_data.md
+++ b/pages/your_domain/human_data.md
@@ -1,5 +1,6 @@
---
title: Human data
+description: Data management solutions for human data
contributors: [Niclas Jareborg, Nirupama Benis, Ana Portugal Melo, Pinar Alper, Laura Portell Silva, Wolmar Nyberg Åkerström, Nazeefa Fatima]
page_id: human data
related_pages:
diff --git a/pages/your_domain/intrinsically_disordered_proteins.md b/pages/your_domain/intrinsically_disordered_proteins.md
index b91e574dc..75648486a 100644
--- a/pages/your_domain/intrinsically_disordered_proteins.md
+++ b/pages/your_domain/intrinsically_disordered_proteins.md
@@ -1,5 +1,6 @@
---
title: Intrinsically disordered proteins
+description: Data management solutions for intrinsically disordered proteins data
contributors: [Ivan Mičetić]
related_pages:
page_id: IDP
diff --git a/pages/your_domain/marine_metagenomics.md b/pages/your_domain/marine_metagenomics.md
index f0112d7a6..391a331a4 100644
--- a/pages/your_domain/marine_metagenomics.md
+++ b/pages/your_domain/marine_metagenomics.md
@@ -1,5 +1,6 @@
---
title: Marine metagenomics
+description: Data management solutions for marine metagenomics data
contributors: [Nils Peder Willassen,Anastasis Oulas,Evangelos Pafilis]
related_pages:
page_id: marine
diff --git a/pages/your_domain/microbial_biotechnology.md b/pages/your_domain/microbial_biotechnology.md
index 69530a36b..39cb78a63 100644
--- a/pages/your_domain/microbial_biotechnology.md
+++ b/pages/your_domain/microbial_biotechnology.md
@@ -1,5 +1,6 @@
---
title: Microbial biotechnology
+description: Data management solutions for microbial biotechnology data
contributors: [Anil Wipat, David Markham, Christian Atallah, Bradley Brown, Munazah Andrabi]
page_id: micro biotech
related_pages:
diff --git a/pages/your_domain/plant_sciences.md b/pages/your_domain/plant_sciences.md
index 497292c15..e13773c54 100644
--- a/pages/your_domain/plant_sciences.md
+++ b/pages/your_domain/plant_sciences.md
@@ -1,5 +1,6 @@
---
title: Plant sciences
+description: Data management solutions for plant sciences data
contributors: [Anne-Françoise Adam-Blondon, Sebastian Beier, Cyril Pommier, Erwan Le Floch, Daniel Faria]
related_pages:
page_id: plants
diff --git a/pages/your_domain/proteomics.md b/pages/your_domain/proteomics.md
index ed5b938b8..7c9624be1 100644
--- a/pages/your_domain/proteomics.md
+++ b/pages/your_domain/proteomics.md
@@ -1,5 +1,6 @@
---
title: Proteomics
+description: Data management solutions for proteomics data
contributors: [Michael Turewicz, Martin Eisenacher, Anika Frericks-Zipper, Ulrike Wittig]
page_id: proteomics
related_pages:
diff --git a/pages/your_domain/structural_bioinformatics.md b/pages/your_domain/structural_bioinformatics.md
index d02a36148..84968759b 100644
--- a/pages/your_domain/structural_bioinformatics.md
+++ b/pages/your_domain/structural_bioinformatics.md
@@ -1,5 +1,6 @@
---
title: Structural Bioinformatics
+description: Data management solutions for structural bioinformatics data
contributors: [Gerardo Tauriello, Ian Sillitoe, Nicola Bordin, Christine Orengo, Mihaly Varadi, Sameer Velankar, Jiří Černý]
page_id: struct bioinfo
related_pages:
diff --git a/pages/your_domain/toxicology_data.md b/pages/your_domain/toxicology_data.md
index 3c7fd05e1..989798ec9 100644
--- a/pages/your_domain/toxicology_data.md
+++ b/pages/your_domain/toxicology_data.md
@@ -1,5 +1,6 @@
---
title: Toxicology data
+description: Data management solutions for toxicology data
contributors: [Manuel Pastor, Janet Piñero Gonzalez, Juan Manuel Ramírez-Anguita, Ferran Sanz, Miguel Angel Mayer, Laura Portell Silva]
page_id: toxicology data
related_pages:
diff --git a/pages/your_role.md b/pages/your_role.md
new file mode 100644
index 000000000..747a63458
--- /dev/null
+++ b/pages/your_role.md
@@ -0,0 +1,15 @@
+---
+title: Your role
+---
+
+In this section, information is organised based on the different roles a professional can have in research data management. You will find:
+- A description of the main tasks usually handled by each role.
+- Advice, guidelines and pointers to useful information about learning paths for data stewardship and getting started with data management.
+- Links to training materials of interest for each role.
+- Links to guidelines and best practices about specific tasks of interest for each role.
+- A summary table of tools and resources relevant for the tasks that each role should address.
+
+
+
+{% include section-navigation-tiles.html type="your_role" search=true %}
+
diff --git a/pages/your_role/TEMPLATE_your_role.md b/pages/your_role/TEMPLATE_your_role.md
index 086276715..e6b0383a1 100644
--- a/pages/your_role/TEMPLATE_your_role.md
+++ b/pages/your_role/TEMPLATE_your_role.md
@@ -1,7 +1,7 @@
---
title: