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[collinr2]

Hi, I am new to eggnog mapper. I have got the programme to work. However, I have a file with only 4 sequences in it but it didn't read any of the sequences in the file. I was wondering if the sequences had to be in a certain format to be able to work.

module load eggnog-mapper/2.1.12-gimkl-2022a

emapper.py --data_dir $DATA_PATH -i /nesi/nobackup/vuw03925/Ortho/combined_orthogroup_fastas/Orthogroup_OG0028850_edited_removed.fasta -o OG0028850_test_3

Thanks!