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conda_pip.yml
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---
name: "Conda + pip"
# Use login shell everywhere
# https://github.com/mamba-org/setup-micromamba/tree/fcc371cea11af9012e5e916ab2dab44b42acdaaa#about-login-shells
on:
push:
branches:
- "main"
- "master"
- "dev"
paths:
- "**.py"
- ".github/workflows/*.yml"
- "pyproject.toml"
- "poetry.lock"
- "locks/*"
pull_request:
paths:
- "**.py"
- ".github/workflows/*.yml"
- "pyproject.toml"
- "poetry.lock"
- "locks/*"
jobs:
run-linters:
name: "Run linters"
runs-on: "ubuntu-latest"
steps:
- name: "Check out Git repository"
uses: "actions/checkout@v3"
- name: "Set up Python"
uses: "actions/setup-python@v3"
with:
python-version: "3.10"
- name: "Install Python dependencies"
run: "pip install 'black'"
- name: "Run linters"
run: "black --diff ./"
run-tests:
needs: "run-linters"
name: "Test Python ${{ matrix.python }} on ${{ matrix.os }} using ${{ matrix.mpi }}"
runs-on: "${{ matrix.os }}"
strategy:
fail-fast: false
matrix:
# os: [ "ubuntu-latest", "macos-latest" ]
# mpi: [ "mpich", "openmpi" ]
os: [ "ubuntu-latest"]
mpi: [ "openmpi" ]
python: [ "3.9", "3.10", "3.11", "3.12" ]
env:
SCHISM_ENV: "SCHISM_ENV"
DELFT3D_ENV: "DELFT3D_ENV"
PYPOSEIDON_ENV: "PYPOSEIDON_ENV"
#
SCHISM_LOCK: locks/conda-${{ matrix.os }}-schism_${{ matrix.mpi }}.lock
DELFT3D_LOCK: locks/conda-${{ matrix.os }}-delft3d_${{ matrix.mpi }}.lock
PYPOSEIDON_LOCK: locks/conda-${{ matrix.os }}-binary-p${{ matrix.python }}.lock
REQUIREMENTS_CI: locks/requirements-ci.txt
REQUIREMENTS_VIZ: locks/requirements-viz.txt
defaults:
run:
shell: "bash -elo pipefail {0}"
steps:
- run: "env | sort"
- uses: "actions/checkout@v3"
- name: "Install micromamba"
run: |
mkdir -p ~/.local/bin/
curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest | tar -xvj -C ~/.local/bin/ --strip-components=1 bin/micromamba
echo export MAMBA_EXE=$(which micromamba) | tee -a ~/.bashrc
echo export MAMBA_ROOT_PREFIX=~/micromamba | tee -a ~/.bashrc
- run: which micromamba
- name: "Create ~/.condarc"
run: |
rm -rf ~/.condarc
cat << EOF > ~/.condarc
---
auto_activate_base: false
auto_stack: false
channel_priority: strict
channels:
- gbrey
- conda-forge
EOF
- run: cat ~/.condarc
- name: "Cache ${{ env.SCHISM_ENV }}"
uses: actions/cache@v3
id: cache-SCHISM_ENV
with:
path: ~/micromamba/envs/${{ env.SCHISM_ENV }}
key: ${{ matrix.os }}-${{ matrix.mpi }}-${{ env.SCHISM_ENV }}-${{ hashFiles( env.SCHISM_LOCK )}}
restore-keys: |
${{ matrix.os }}-${{ matrix.mpi }}-${{ env.SCHISM_ENV }}-
- name: "Cache ${{ env.DELFT3D_ENV }}"
uses: actions/cache@v3
id: cache-DELFT3D_ENV
with:
path: ~/micromamba/envs/${{ env.DELFT3D_ENV }}
key: ${{ matrix.os }}-${{ matrix.mpi }}-${{ env.DELFT3D_ENV }}-${{ hashFiles( env.DELFT3D_LOCK )}}
restore-keys: |
${{ matrix.os }}-${{ matrix.mpi }}-${{ env.DELFT3D_ENV }}-
- name: "Cache ${{ env.PYPOSEIDON_ENV }}"
uses: actions/cache@v3
id: cache-PYPOSEIDON_ENV
with:
path: ~/micromamba/envs/${{ env.PYPOSEIDON_ENV }}
key: ${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOSEIDON_ENV }}-${{ hashFiles( env.PYPOSEIDON_LOCK )}}-${{ hashFiles( env.REQUIREMENTS_CI )}}
restore-keys: |
${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOSEIDON_ENV }}-${{ hashFiles( env.PYPOSEIDON_LOCK )}}
${{ matrix.os }}-${{ matrix.python }}-${{ env.PYPOSEIDON_ENV }}-
- name: Cache tests/data/
uses: actions/cache@v3
env:
# Increase this value to reset cache if files in tests/data have been added/removed
CACHE_NUMBER: 0
with:
path: /home/runner/work/pyPoseidon/pyPoseidon/tests/data
key: tests_data-${{ env.CACHE_NUMBER }}
- name: "Create ${{ env.SCHISM_ENV }}"
if: steps.cache-SCHISM_ENV.outputs.cache-hit != 'true'
run: micromamba create --yes --name ${SCHISM_ENV} -f ${SCHISM_LOCK}
- name: "Create ${{ env.DELFT3D_ENV }}"
if: steps.cache-DELFT3D_ENV.outputs.cache-hit != 'true'
run: micromamba create --yes --name ${DELFT3D_ENV} -f ${DELFT3D_LOCK}
- name: "Create ${{ env.PYPOSEIDON_ENV }}"
if: steps.cache-PYPOSEIDON_ENV.outputs.cache-hit != 'true'
run: micromamba create --yes --name ${PYPOSEIDON_ENV} -f ${PYPOSEIDON_LOCK}
- name: "Check schism version"
run: |
eval "$(micromamba shell hook)"
micromamba activate "${SCHISM_ENV}"
schism -v
- name: "Install python dependencies"
run: |
eval "$(micromamba shell hook)"
micromamba activate --stack "${PYPOSEIDON_ENV}"
python -mpip install -U pip
python -mpip install -r "${REQUIREMENTS_CI}"
python -mpip install ./
- name: "Run tests: Basic"
run: |
eval "$(micromamba shell hook)"
micromamba activate "${SCHISM_ENV}"
micromamba activate --stack "${DELFT3D_ENV}"
micromamba activate --stack "${PYPOSEIDON_ENV}"
make test
# - name: "Run tests: Viz"
# if: matrix.python != '3.11'
# run: |
# eval "$(micromamba shell hook)"
# micromamba activate "${PYPOSEIDON_ENV}"
# python -mpip install -r "${REQUIREMENTS_VIZ}"
# make test_viz
- name: "Run tests: Schism"
run: |
eval "$(micromamba shell hook)"
micromamba activate "${SCHISM_ENV}"
# micromamba activate --stack "${DELFT3D_ENV}"
micromamba activate --stack "${PYPOSEIDON_ENV}"
make test_schism
- name: "Run tests: Delft"
run: |
eval "$(micromamba shell hook)"
# micromamba activate "${SCHISM_ENV}"
micromamba activate --stack "${DELFT3D_ENV}"
micromamba activate --stack "${PYPOSEIDON_ENV}"
make test_delft