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Error installing from source under GNU/Linux #17

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slackline opened this issue Oct 10, 2014 · 0 comments
Open

Error installing from source under GNU/Linux #17

slackline opened this issue Oct 10, 2014 · 0 comments

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@slackline
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I've been trying to update RJSONIO for a while now but it repeatedly fails to compile.

configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating cleanup
** libs
x86_64-pc-linux-gnu-gcc -std=gnu99 -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c ConvertUTF.c -o ConvertUTF.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONAllocator.cpp -o JSONAllocator.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONChildren.cpp -o JSONChildren.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONMemory.h:6,
                 from libjson/Source/JSONChildren.h:6,
                 from JSONChildren.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONDebug.cpp -o JSONDebug.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from JSONDebug.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONIterators.cpp -o JSONIterators.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONNode.h:4,
                 from JSONIterators.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONMemory.cpp -o JSONMemory.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONMemory.h:6,
                 from JSONMemory.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONNode.cpp -o JSONNode.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONNode.h:4,
                 from JSONNode.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONNode_Mutex.cpp -o JSONNode_Mutex.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONNode.h:4,
                 from JSONNode_Mutex.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONPreparse.cpp -o JSONPreparse.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONPreparse.h:4,
                 from JSONPreparse.cpp:10:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONStream.cpp -o JSONStream.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONStream.h:4,
                 from JSONStream.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONValidator.cpp -o JSONValidator.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONValidator.h:4,
                 from JSONValidator.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1  -DJSON_VALIDATE  -DJSON_STREAM=1 -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT -DJSON_STREAM -DJSON_DEBUG     -fpic  -O2 -pipe  -c JSONWorker.cpp -o JSONWorker.o
In file included from libjson/Source/JSONDebug.h:4:0,
                 from libjson/Source/JSONNode.h:4,
                 from libjson/Source/JSONWorker.h:4,
                 from JSONWorker.cpp:1:
libjson/Source/JSONDefs.h:149:6: warning: #warning , Have JSON_DEBUG on in a release build [-Wcpp]
     #warning, Have JSON_DEBUG on in a release build
      ^
In file included from libjson/Source/JSONDefs.h:12:0,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONNode.h:4,
                 from libjson/Source/JSONWorker.h:4,
                 from JSONWorker.cpp:1:
JSONWorker.cpp: In static member function 'static unsigned char JSONWorker::UTF8(const char*&, const char*)':
JSONWorker.cpp:297:21: error: 'intptr_t' was not declared in this scope
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
                     ^
libjson/Source/JSONDefs/GNU_C.h:38:61: note: in definition of macro 'json_unlikely'
     #define json_unlikely(x) __builtin_expect((long)((bool)(x)),0)
                                                             ^
JSONWorker.cpp:297:2: note: in expansion of macro 'JSON_ASSERT_SAFE'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
  ^
JSONWorker.cpp:297:30: error: expected ')' before 'end'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
                              ^
libjson/Source/JSONDefs/GNU_C.h:38:61: note: in definition of macro 'json_unlikely'
     #define json_unlikely(x) __builtin_expect((long)((bool)(x)),0)
                                                             ^
JSONWorker.cpp:297:2: note: in expansion of macro 'JSON_ASSERT_SAFE'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
  ^
In file included from libjson/Source/JSONNode.h:4:0,
                 from libjson/Source/JSONWorker.h:4,
                 from JSONWorker.cpp:1:
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:297:2: note: in expansion of macro 'JSON_ASSERT_SAFE'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
  ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:297:2: note: in expansion of macro 'JSON_ASSERT_SAFE'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
  ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:297:2: note: in expansion of macro 'JSON_ASSERT_SAFE'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
  ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:297:2: note: in expansion of macro 'JSON_ASSERT_SAFE'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
  ^
libjson/Source/JSONDebug.h:15:5: error: expected primary-expression before '}' token
     }
     ^
JSONWorker.cpp:297:2: note: in expansion of macro 'JSON_ASSERT_SAFE'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
  ^
libjson/Source/JSONDebug.h:15:5: error: expected ';' before '}' token
     }
     ^
JSONWorker.cpp:297:2: note: in expansion of macro 'JSON_ASSERT_SAFE'
  JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 4, JSON_TEXT("UTF will go out of bounds"), return JSON_TEXT('\0'););
  ^
In file included from libjson/Source/JSONDefs.h:12:0,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONNode.h:4,
                 from libjson/Source/JSONWorker.h:4,
                 from JSONWorker.cpp:1:
JSONWorker.cpp: In function 'char FromOctal(const char*&, const char*)':
JSONWorker.cpp:340:24: error: 'intptr_t' was not declared in this scope
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
                        ^
libjson/Source/JSONDefs/GNU_C.h:38:61: note: in definition of macro 'json_unlikely'
     #define json_unlikely(x) __builtin_expect((long)((bool)(x)),0)
                                                             ^
JSONWorker.cpp:340:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
     ^
JSONWorker.cpp:340:33: error: expected ')' before 'end'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
                                 ^
libjson/Source/JSONDefs/GNU_C.h:38:61: note: in definition of macro 'json_unlikely'
     #define json_unlikely(x) __builtin_expect((long)((bool)(x)),0)
                                                             ^
JSONWorker.cpp:340:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
     ^
In file included from libjson/Source/JSONNode.h:4:0,
                 from libjson/Source/JSONWorker.h:4,
                 from JSONWorker.cpp:1:
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:340:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
     ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:340:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
     ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:340:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
     ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:340:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
     ^
libjson/Source/JSONDebug.h:15:5: error: expected primary-expression before '}' token
     }
     ^
JSONWorker.cpp:340:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
     ^
libjson/Source/JSONDebug.h:15:5: error: expected ';' before '}' token
     }
     ^
JSONWorker.cpp:340:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)str) > 3, JSON_TEXT("Octal will go out of bounds"), return JSON_TEXT('\0'););
     ^
In file included from libjson/Source/JSONDefs.h:12:0,
                 from libjson/Source/JSONDebug.h:4,
                 from libjson/Source/JSONNode.h:4,
                 from libjson/Source/JSONWorker.h:4,
                 from JSONWorker.cpp:1:
JSONWorker.cpp: In static member function 'static void JSONWorker::SpecialChar(const char*&, const char*, json_string&)':
JSONWorker.cpp:389:24: error: 'intptr_t' was not declared in this scope
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
                        ^
libjson/Source/JSONDefs/GNU_C.h:38:61: note: in definition of macro 'json_unlikely'
     #define json_unlikely(x) __builtin_expect((long)((bool)(x)),0)
                                                             ^
JSONWorker.cpp:389:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
     ^
JSONWorker.cpp:389:33: error: expected ')' before 'end'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
                                 ^
libjson/Source/JSONDefs/GNU_C.h:38:61: note: in definition of macro 'json_unlikely'
     #define json_unlikely(x) __builtin_expect((long)((bool)(x)),0)
                                                             ^
JSONWorker.cpp:389:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
     ^
In file included from libjson/Source/JSONNode.h:4:0,
                 from libjson/Source/JSONWorker.h:4,
                 from JSONWorker.cpp:1:
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:389:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
     ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:389:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
     ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:389:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
     ^
libjson/Source/JSONDebug.h:15:5: error: expected ')' before '}' token
     }
     ^
JSONWorker.cpp:389:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
     ^
libjson/Source/JSONDebug.h:15:5: error: expected primary-expression before '}' token
     }
     ^
JSONWorker.cpp:389:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
     ^
libjson/Source/JSONDebug.h:15:5: error: expected ';' before '}' token
     }
     ^
JSONWorker.cpp:389:5: note: in expansion of macro 'JSON_ASSERT_SAFE'
     JSON_ASSERT_SAFE(((intptr_t)end - (intptr_t)pos) > 3, JSON_TEXT("Hex will go out of bounds"), res += JSON_TEXT('\0'); return;);
     ^
/usr/lib64/R/etc/Makeconf:137: recipe for target 'JSONWorker.o' failed
make: *** [JSONWorker.o] Error 1
ERROR: compilation failed for package 'RJSONIO'
* removing '/usr/lib64/R/library/RJSONIO'
ERROR: dependency 'RJSONIO' is not available for package 'shiny'
* removing '/usr/lib64/R/library/shiny'

The downloaded source packages are in
    '/tmp/RtmpYuGHL3/downloaded_packages'
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning messages:
1: In install.packages("shiny") :
  installation of package 'RJSONIO' had non-zero exit status
2: In install.packages("shiny") :
  installation of package 'shiny' had non-zero exit status

I don't have the libjson installed from libjson.sourceforge.net so it was pretty obvious that I'd have to use the libjson that is included in the package. So...

# wget http://cran.r-project.org/src/contrib/RJSONIO_1.3-0.tar.gz
--2014-10-10 12:43:03--  http://cran.r-project.org/src/contrib/RJSONIO_1.3-0.tar.gz
Resolving cran.r-project.org... 137.208.57.37
Connecting to cran.r-project.org|137.208.57.37|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 1148375 (1.1M) [application/x-gzip]
Saving to: 'RJSONIO_1.3-0.tar.gz'

100%[==================================================================================================================================================================================================>] 1,148,375   2.53MB/s   in 0.4s   

2014-10-10 12:43:04 (2.53 MB/s) - 'RJSONIO_1.3-0.tar.gz' saved [1148375/1148375]

kimura downloaded_packages # R CMD INSTALL --configure-args="--with-local-libjson=yes" RJSONIO_1.3-0.tar.gz 
* installing to library '/usr/lib64/R/library'
* installing *source* package 'RJSONIO' ...
** package 'RJSONIO' successfully unpacked and MD5 sums checked
USE_LOCAL = "yes"
Minor Version: 6
Using local libjson code. Copying files from src/libjson/Source
/tmp/RtmpPIaS0D/R.INSTALL1a4b4a0a1c84/RJSONIO
JSONAllocator.cpp
JSONChildren.cpp
JSONDebug.cpp
JSONIterators.cpp
JSONMemory.cpp
JSONNode.cpp
JSONNode_Mutex.cpp
JSONPreparse.cpp
JSONStream.cpp
JSONValidator.cpp
JSONWorker.cpp
JSONWriter.cpp
internalJSONNode.cpp
libjson.cpp
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating cleanup
** libs
x86_64-pc-linux-gnu-gcc -std=gnu99 -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c ConvertUTF.c -o ConvertUTF.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONAllocator.cpp -o JSONAllocator.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONChildren.cpp -o JSONChildren.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONDebug.cpp -o JSONDebug.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONIterators.cpp -o JSONIterators.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONMemory.cpp -o JSONMemory.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONNode.cpp -o JSONNode.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONNode_Mutex.cpp -o JSONNode_Mutex.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONPreparse.cpp -o JSONPreparse.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONStream.cpp -o JSONStream.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONValidator.cpp -o JSONValidator.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONWorker.cpp -o JSONWorker.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSONWriter.cpp -o JSONWriter.o
x86_64-pc-linux-gnu-gcc -std=gnu99 -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c JSON_parser.c -o JSON_parser.o
x86_64-pc-linux-gnu-gcc -std=gnu99 -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c RJSON.c -o RJSON.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c internalJSONNode.cpp -o internalJSONNode.o
x86_64-pc-linux-gnu-g++ -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c libjson.cpp -o libjson.o
x86_64-pc-linux-gnu-gcc -std=gnu99 -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c rlibjson.c -o rlibjson.o
rlibjson.c: In function 'R_fromJSON':
rlibjson.c:49:9: note: #pragma message: activate the debug_callback
 #pragma message("activate the debug_callback")
         ^
x86_64-pc-linux-gnu-gcc -std=gnu99 -I/usr/lib64/R/include -DNDEBUG -I. -Ilibjson -Ilibjson/Source -DNEW_JSON_NEW_STREAM -DNDEBUG=1 -DJSON_STREAM=1 -DJSON_VALIDATE -DJSON_READ_PRIORITY=1 -DJSON_LIBRARY=1  -DJSON_ISO_STRICT     -fpic  -O2 -pipe  -c rparser.c -o rparser.o
x86_64-pc-linux-gnu-g++ -shared -Wl,-O1 -Wl,--as-needed -o RJSONIO.so ConvertUTF.o JSONAllocator.o JSONChildren.o JSONDebug.o JSONIterators.o JSONMemory.o JSONNode.o JSONNode_Mutex.o JSONPreparse.o JSONStream.o JSONValidator.o JSONWorker.o JSONWriter.o JSON_parser.o RJSON.o internalJSONNode.o libjson.o rlibjson.o rparser.o -L/usr/lib64/R/lib -lR
installing to /usr/lib64/R/library/RJSONIO/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RJSONIO)

...solves evertyhing, but I was curious if there is a way to use the default bundled libjson if none is found natively on the target system?
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