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RNAEditor 1.0 AttributeError: 'pysam.csamtools.PileupRead' object has no attribute 'is_refskip' #34

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zhangjy859 opened this issue Aug 11, 2023 · 0 comments

zhangjy859 commented Aug 11, 2023

Hi, I am trying to run RNAEditor in command line, but I got a AttributeError at remove Missmatches step, could you please give me some suggestion?

File "/software/RNAEditor/VariantSet.py", line 814, in removeEdgeMismatches
if not pileupread.is_del and not pileupread.is_refskip:
                                                                  AttributeError: 'pysam.csamtools.PileupRead' object has no attribute 'is_refskip'

python -v

Python 2.7.12 (default, Mar  1 2021, 11:38:31)
[GCC 5.4.0 20160609] on linux2

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