DESCRIPTION

Package: seqgendiff
Type: Package
Title: RNA-Seq Generation/Modification for Simulation
Version: 1.2.4
Authors@R: person("David", "Gerard", email = "gerard.1787@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9450-5023"))
Description: Generates/modifies RNA-seq data for use in simulations. We provide
    a suite of functions that will add a known amount of signal to a real 
    RNA-seq dataset. The advantage of using this approach over simulating under
    a theoretical distribution is that common/annoying aspects of the data
    are more preserved, giving a more realistic evaluation of your method. 
    The main functions are select_counts(), thin_diff(), thin_lib(), 
    thin_gene(), thin_2group(), thin_all(), and effective_cor(). See
    Gerard (2020) <doi:10.1186/s12859-020-3450-9> for details on the
    implemented methods.
License: GPL-3
Encoding: UTF-8
URL: https://github.com/dcgerard/seqgendiff
BugReports: https://github.com/dcgerard/seqgendiff/issues
RoxygenNote: 7.3.1
Suggests: 
    covr,
    testthat (>= 2.1.0),
    SummarizedExperiment,
    DESeq2,
    knitr,
    rmarkdown,
    airway,
    limma,
    qvalue,
    edgeR
Imports: 
    assertthat,
    irlba,
    sva,
    pdist,
    matchingR,
    clue
VignetteBuilder: knitr