Changelog

1.8.1 (unreleased)

nothing changed yet.

1.8.0 (2024-04-16)

Update documentation to include what mne functions are used by the actions
Make it possible to create experiment based on a open datasets
Update evoked and tfr default names
Use standard locations for config and data files
Make it possible to have dataobjects without raw
Fix identifying common channels in tfr group average

1.7.0 (2024-03-25)

Fix actions.log propagation problem
Add a lot of tests for maintainability
Add new partially generated readthedocs documentation
Add "Add MNE sample data" option to subject dialog.
Add tooltips to actions using configuration.json metadata
Add a little messagebox if no subject is active when clicking an action
Fix empty lines problem in channel groups dialog
Update to support mne==1.6.1

1.6.3 (2023-12-11)

Fix problem with a regexp in save_raw.

1.6.2 (2023-11-27)

Fix group averages for multiple groups
Fix tse plot units with no-mean baseline correction

1.6.1 (2023-11-23)

Fix save_raw for long recordings with split files

1.6.0 (2023-11-06)

Make meggie consistent across induced response channel averages: baseline is corrected to before averaging over channels
Pin matplotlib==3.7.3 as newer matplotlibs are not compatible with pinned mne==1.3.1
Fix bug where saving TFR's resulted in csv file for each subject even though there should be only one file with all subjects' data in.

1.5.3 (2023-10-23)

Fix error that happened when saving TFR without baselining

1.5.2 (2023-08-03)

Allow selecting multiple channels for rereferencing

1.5.1 (2023-04-05)

Remove a forgotten debug command
Fix tests

1.5.0 (2023-04-05)

Update to mne==1.3.1
Replace heuristic find_stim_channel with mne's own

1.4.4 (2023-04-03)

Better color defaults for TFR's
Fix regression in group average assertions

1.4.3 (2022-12-14)

Fix spectrum dialog crashing for non-int overlap

1.4.2 (2022-12-12)

Fix evoked image plot

1.4.1 (2022-11-25)

Allow persistent custom preferences in .meggieprefs

1.4.0 (2022-11-21)

Fix meggie to use matplotlib backend for plot browser even when mne-qt-browser is installed

1.3.9 (2022-10-18)

And fix one more missing set_figure_title

1.3.8 (2022-10-18)

nothing changed yet.

1.3.7 (2022-10-18)

Fix breaking typo

1.3.6 (2022-10-18)

matplotlib introduced a breaking change

1.3.6 (2022-10-28)

Fix packaging

1.3.5 (2022-10-18)

Fix regressions due to mne changes.

1.3.4 (2022-05-19)

Bump version to fix pypi build

1.3.3 (2022-0-23)

Require python>=3.7

1.3.2 (2022-0-23)

Pin mne to 1.0.0
..and fix related

1.3.1 (2021-09-08)

Add missing h5py dependency

1.3.0 (2021-08-20)

Fix spectrums and actions for old experiments
Add descriptions to logged actions

1.2.1 (2021-08-19)

Update setup.py for pypi

1.2.0 (2021-08-19)

Switch to pipelines and actions architecture
Replace message logging with more structured actions logging
Add three basic pipelines for evokeds, spectrums and TFR's
Make it possible to easily extend pipelines from plugins
Add dialog for explicitly enabling or disabling installed plugins
Improve exception handling to avoid crashing
Add more throbbers to UI

1.1.1 (2021-06-21)

Add simple reusable dialog

1.1.0 (2021-05-12)

Make mne==0.23.0 compatible
Add permutation tests
Clean codebase for better reuse
Add docstrings and autogenerate documentation using sphinx
Include mne.Info to spectrum objects.
Fix non-fif reading.
Add utility for generating multi-subject experiments from sample_audvis_raw
Update messaging
Move source analysis out to external plugin.

1.0.2 (2021-03-02)

Fix channel average plots with non-orthodox channel groups

1.0.1 (2021-03-02)

Fix issue with channel selection saving

1.0.0 (2020-01-11)

Add 19 tests.
Improve exception handling and logging
Make plugin loading more robust
Fix tab ordering of main window
Channel average plots for each channel type are put into single figure
Fix tse baselining for channel averages
Sorted conditions in topo plot and channel averages
Try to use default channel groups if channel groups not set
Fix regexp for next_available_name
Allow delay in epoch creation

0.17.1 (2020-12-31)

Update mne dependency to >=0.22.0

0.17.0 (2020-12-31)

Remove workspace attribute from experiment and use path instead
Do not require comment attribute to be set when creating Evoked
Try to get default channel groups from active subject if channel groups not set
Add tests for utilities, experiment.py, subject.py and datatypes
Remove old stc code to separate branch
Add new import possibilities by using read_raw instead of read_raw_fif
If both EEG and MEG data present, show both when plotting topography
Add event delay for epoch creation
Fix mne_wrapper pkgutil bug
Improve exception messaging in many places

0.16.1 (2020-11-13)

Fix broken import

0.16.0 (2020-11-13)

Add single channel plotting functionality for evokeds
Add radius setting for evoked topomaps (to allow different "skirts")
Add more information to info boxes
Overwrite when saving epochs
Fix import bug in montage dialog
Fix reject param ticks bug

0.15.0 (2020-04-20)

Use Qt5 backend instead off Tkinter for matplotlib (fixes threading issues, hopefully not much slower)
Implement plugin discovery
Try printing more info on terminal on crash even on non-debug session
Update to mne==0.20.0
Replace layouts with default montages (mne is deprecating layouts)
Add dialog for setting and computing channel average groups
Store spectrums under the hood only in power units
Fix couple of crashes
Clean up iterate_topography code and name cleaning code
In saved csvs, use different columns for ch_name, ch_type, subject name etc.

0.14.6 (2020-03-11)

Improve memory handling

0.14.5 (2020-03-09)

Add events from annotations dialog
Allow missing end points in dynamic spectrum creation

0.14.4 (2020-02-19)

Fix subject removal error when any subject activated
Add times settings to evoked topomaps

0.14.3 (2020-02-14)

Fix saving exceptions

0.14.2 (2019-12-18)

Fix layout problem

0.14.1 (2019-12-18)

Experiment file backup when saving
Splitter to main window
Improve dynamic spectrum creation
Fix bugs

0.14.0 (2019-12-17)

New dynamic tab and datatype handling unifies both code and look
Tab presets for pipelines
Look and implementation of dialogs unified
MaiWindow left bar updated
Be more defensive on getting maxfilter info
Improve spectrum batching with more options to dynamic interval selection
CSV saving for TFR's
Add more baselining options to TFR's
Make mne==0.19.2 compatible
Add default object namings for dialogs
Lots of codebase cleaning
Update mne logging from whitelisting to blacklisting

0.13.1 (2019-04-28)

Fix log dialog filtering
Clean up code base
Fix crashes when no subject is activated

0.13.0 (2019-04-13)

Fix source analysis pipeline
Fix epochs plot scale
Allow multiple conditions in TFR's
Implement multi-group-average for TFR's
Add TSE plot

0.12.0 (2019-04-03)

Add filter options to log window
Remove SSP for now
Implement multi-group-average for evokeds and spectrums
Make batching widget more sensible
Add batch for resampling, spectrums and TFR's
Implement channel averages for TFR's
Improve TFR dialogs
Catch name validation failures

0.11.1 (2019-03-24)

Allow adding same dataset again, add number suffix
Fix batch widget in event selection dialog
Fix group averages if only active subject contains the data

0.11.0 (2019-03-18)

Update MNE dependency to 0.17.1
Add and unify channel averaging in spectrums and evokeds
Open experiment also by specifying exp file
Disallow creating new experiment over existing experiment
Fix power spectrum dialog name field size
Improve EEG support

0.10.1 (2019-02-21)

Fix typo that made epoch creation crash

0.10.0 (2019-02-21)

Refactor code
Make meggie windows compatible
Fix bugs
Clean up UI

0.9.1 (2019-01-15)

Implement resampling and rereferencing
Add baseline adjusting to epochs
Add bad channel dropping to evoked topo
Fix ICA for EEG
Fix EEG topomaps
Update to mne==0.17.0

0.9.0 (2018-11-06)

Update code to be python3 and pyqt5 compatible
Fix splitted raw file problem with spectrum computation
Separate grad and mag ch types properly in spectrum computation
Add small beauty enhancements

0.8.1 (2018-05-03)

Fix bugs

0.8.0 (2018-05-02)

Fix evoked topomap title bug
Implement group average for psd's and tfr's
Fix defaults for tfr and psd creation
Don't exclude bads when creating epochs
Fix epoch overwrite bug
Separate creation, plotting and saving of TFR's and spectrums
Spectrums to their own tab
Refactor codebase

0.7.0 (2018-04-12)

Add plot evoked topomaps
Add output options for spectrums
Remove evoked stats dialog
Add throbbers
Add subject list sorting
Update power spectrum dialog default values
Fix evoked batch ui initialization bug

0.6.3 (2018-04-03)

Fix ICA

0.6.2 (2018-03-23)

Add throbbers

0.6.1 (2018-03-22)

Refactor code
Update throbbers
Clean up messages

0.6.0 (2018-03-09)

Pin MNE-python dependency to 0.15.2
Update logging mechanism
Refactor a lot of codebase
(Re)implement the source analysis pipeline
Fix ICA custom layout issue

0.5.2 (2017-10-14)

Add throbber to ICA computation

0.5.1 (2017-10-14)

Fix bug that broke opening of some EEG files

0.5.0 (2017-08-14)

Implement simple ICA for preprocessing
Fix bug of pattern matching in file saving validity check
Fix open raw problem
Use weighted average for averaging in spectrums
Hide some misleading warnings
Add meggie version number to experiment files
Fix power spectrum units label
Improve folder structure and code quality of meggie
Improve evoked topology colors
Do not save raw if saving terminated
Add save data tick for tfr topology

0.4.3 (2017-04-04)

Remove unnecessary import that crashed after scipy updated

0.4.2 (2017-04-04)

Don't crash on MNE-python's show_fiff-bug

0.4.1 (2016-12-09)

Add polarity inversion feature to ocular projections dialog
Do plot for exg events
Fix epoch channel visualization error

0.4.0 (2016-12-07)

Remove window scaling from dialog parameters in epoch channel visualization
Fix batching widget error when collect_parameter_values returned empty list
Update TFR dialogs and allow saving
Change file naming
Fix TFR in preprocessing tab
Do experiment specific layout selection
Do not make copy of raw when open customize bads dialog
Rename fourier analysis -tab to spectral analysis -tab
Make changes in averaging tab including stats dialog
Fix ecg/eog dialogs
Fix epoch plot to not save bads

0.3.9 (2016-11-21)

Fix subject activation bug
Clean up logging code a bit
Do bad channel selection dialog
change logic that checks if projs are applied
Fix bitselectiondialog
fix meggie events
fix filter batch
fix projs previews
remove mne_browse_raw
Remove tabs from code
Remove stim in eventselectiondialog
Remake epoch masking
Do not change bad channels when normally plotting raw

0.3.8 (2016-11-07)

Update MNE to 0.13.0
Fix error of meggie not starting because of random import

0.3.7 (2016-11-01)

Add uint_cast=True when finding events
Check if file has movement corrections
fix spurious event detection
remove stimulus channel selection in eventselectiondialog
Use stim channel when finding events in power spectrum dialog
Fix default stim channel in event selection dialog

0.3.6 (2016-10-27)

Fix preferences dialog

0.3.5 (2016-10-27)

Fix mask length on spectrum events dialog

0.3.4 (2016-10-27)

Update bit selection dialog

0.3.3 (2016-10-25)

Do bit selection dialog
Finetune spectrum interval finding

0.3.2 (2016-10-18)

Do event based power spectrum calculation
Fix evoked stats channel visualization.
Set correct default tab on source analysis.
Fix bug of end time equaling length of data crashing the spectrum calculation
Fix bug where ECG batching didnt work for a set of subjects in experiment

0.3.1 (2016-08-03)

Fix power spectrum bug

0.3.0 (2016-08-01)

New Fourier analysis tab
Source analysis tabs gathered to same place
Simplify tfr and spectrum calculations on raw data
Allow spectrums to be calculated for epoched data
Better save data functionality
Cleaner dialogs
Update MNE to 0.12.0
Global n_jobs setting

0.2.9 (2016-04-27)

Improve performance in ECG calculation dialog
Make exp file more readable

0.2.8 (2016-04-25)

Remove epoch and evoked batch, clear event list

0.2.7 (2016-04-21)

Fix EEG reference reapplying
UI stuff

0.2.6 (2016-04-19)

Allow saving all evoked data
Interesting channels selection on epoch creation
Fix layout files
Group averaging creates evoked object

0.2.5 (2016-04-07)

Revert to meggie console logging

0.2.4 (2016-04-07)

Fix epoch rejections

0.2.3 (2016-04-07)

Fix bugs

0.2.2 (2016-04-01)

Debug logging

0.2.1 (2016-03-31)

Fix after broken merge

0.2.0 (2016-03-31)

Whole new batching functionality
New beautiful core without pickling
Experiments can be opened from everywhere
Old-style experiments cannot be opened anymore
Cleaned up a lot of code
Log mne commands

0.1.5 (2016-02-08)

Add missing dependencies

0.1.4 (2016-02-01)

Use home folder for preferences instead of installation folder
Clean up prints

0.1.3 (2016-01-25)

Fix mask spinBox

0.1.2 (2016-01-22)

Logging

0.1.1 (2016-01-13)

Fix backwards compatibility issue and exclude some unnecessary files from the package

0.1.0 (2016-01-08)

Initial release with conda packaging system