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different assembler/fasta not working #8
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UPDATE: When I take out the
Again, still not sure what this means or what to do...I should only have 16 chromosomes and one chmrt and it's giving me 22? If anyone could help me understand this that would be great! |
I fixed that issue by inputting in my CHR_NAMES corresponding to my reference because its defaulting to human chromosome names. so something like this: CHRS <-c("chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12","chr13","chr14","chr15","chr16") createVCFplot( VCF, FASTA_FILE=FASTA, CHR_NAMES=CHRS) |
Hello, I'm trying to use this tool to visualize differences in variants in yeast strains - specifically Saccharomyces cerevisiae S288C.
I tried this code:
But I keep getting this error:
Is there something else I need to put instead of this? I'm not sure what to put for the
ASSEMBLY
variable - I tried "S288C" as well and still the same error.The text was updated successfully, but these errors were encountered: