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Store field transformation information in the CRDCH model #157

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gaurav opened this issue Nov 17, 2021 · 0 comments
Open

Store field transformation information in the CRDCH model #157

gaurav opened this issue Nov 17, 2021 · 0 comments
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@gaurav
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gaurav commented Nov 17, 2021

Current work on the GDC- and PDC-to-CRDCH transformation code in the Example Data repo suggests that many transformations are relatively straightforward, such as one field renamed as another field. Some of this information could potentially be stored in the CRDCH Model itself, so that automated transformation could use the model information to transform a lot of data without any additional instructions.

Note that this is closely tied to cancerDHC/example-data#30, which is the same problem viewed the other way: how to record what transformations were made, rather than those that need to be made.

I've currently marked this as Future Goals, since I don't think this is an immediate priority, but it'd be nice for LinkML developers to think about this.

@gaurav gaurav added this to the Future goals milestone Nov 17, 2021
@gaurav gaurav changed the title Look mapping information in CRDCH model Store field transformation information in the CRDCH model Nov 17, 2021
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