diff --git a/public/pnf_serra_nfosi_2023/cancer_type.txt b/public/pnf_serra_nfosi_2023/cancer_type.txt new file mode 100644 index 0000000000..dd9092d1b0 --- /dev/null +++ b/public/pnf_serra_nfosi_2023/cancer_type.txt @@ -0,0 +1 @@ +pnf Plexiforme Neurofibroma DarkOrchid nfib diff --git a/public/pnf_serra_nfosi_2023/data_clinical_patient.txt b/public/pnf_serra_nfosi_2023/data_clinical_patient.txt new file mode 100644 index 0000000000..f7ba73886d --- /dev/null +++ b/public/pnf_serra_nfosi_2023/data_clinical_patient.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:80db27442923770389c7801f6c59b6c9d17d2756d3468df68a37d548151238aa +size 369 diff --git a/public/pnf_serra_nfosi_2023/data_clinical_sample.txt b/public/pnf_serra_nfosi_2023/data_clinical_sample.txt new file mode 100644 index 0000000000..ce6778125c --- /dev/null +++ b/public/pnf_serra_nfosi_2023/data_clinical_sample.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ee7780781e90f44203ec6ebf48b3ed6a34cf4950fd9fc7ff1ee6f6dcf171b36c +size 1312 diff --git a/public/pnf_serra_nfosi_2023/data_expression_raw.txt b/public/pnf_serra_nfosi_2023/data_expression_raw.txt new file mode 100644 index 0000000000..02ab117dcf --- /dev/null +++ b/public/pnf_serra_nfosi_2023/data_expression_raw.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5e8ff8e0fbdf7b53f338b9b8b1b2bc6f90546ea0fc0c79ec534eeff22e7da190 +size 5536549 diff --git a/public/pnf_serra_nfosi_2023/data_expression_tpm.txt b/public/pnf_serra_nfosi_2023/data_expression_tpm.txt new file mode 100644 index 0000000000..05b0d9f5c1 --- /dev/null +++ b/public/pnf_serra_nfosi_2023/data_expression_tpm.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8ccdc7a4625e0028da01035fde170739926e9a8941cb3b3059cacb5bc239da75 +size 8611497 diff --git a/public/pnf_serra_nfosi_2023/meta_cancer_type.txt b/public/pnf_serra_nfosi_2023/meta_cancer_type.txt new file mode 100644 index 0000000000..d578a42897 --- /dev/null +++ b/public/pnf_serra_nfosi_2023/meta_cancer_type.txt @@ -0,0 +1,3 @@ +genetic_alteration_type: CANCER_TYPE +datatype: CANCER_TYPE +data_filename: cancer_type.txt diff --git a/public/pnf_serra_nfosi_2023/meta_clinical_patient.txt b/public/pnf_serra_nfosi_2023/meta_clinical_patient.txt new file mode 100644 index 0000000000..01ae28dcf2 --- /dev/null +++ b/public/pnf_serra_nfosi_2023/meta_clinical_patient.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: pnf_serra_nfosi_2023 +genetic_alteration_type: CLINICAL +datatype: PATIENT_ATTRIBUTES +data_filename: data_clinical_patient.txt diff --git a/public/pnf_serra_nfosi_2023/meta_clinical_sample.txt b/public/pnf_serra_nfosi_2023/meta_clinical_sample.txt new file mode 100644 index 0000000000..e8a5865a73 --- /dev/null +++ b/public/pnf_serra_nfosi_2023/meta_clinical_sample.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: pnf_serra_nfosi_2023 +genetic_alteration_type: CLINICAL +datatype: SAMPLE_ATTRIBUTES +data_filename: data_clinical_sample.txt diff --git a/public/pnf_serra_nfosi_2023/meta_expression_raw.txt b/public/pnf_serra_nfosi_2023/meta_expression_raw.txt new file mode 100644 index 0000000000..61ac58e966 --- /dev/null +++ b/public/pnf_serra_nfosi_2023/meta_expression_raw.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: pnf_serra_nfosi_2023 +genetic_alteration_type: MRNA_EXPRESSION +datatype: CONTINUOUS +stable_id: rna_seq_mrna +show_profile_in_analysis_tab: true +profile_name: mRNA expression +profile_description: Expression levels +data_filename: data_expression_raw.txt diff --git a/public/pnf_serra_nfosi_2023/meta_expression_tpm.txt b/public/pnf_serra_nfosi_2023/meta_expression_tpm.txt new file mode 100644 index 0000000000..95df081ce6 --- /dev/null +++ b/public/pnf_serra_nfosi_2023/meta_expression_tpm.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: pnf_serra_nfosi_2023 +genetic_alteration_type: MRNA_EXPRESSION +datatype: CONTINUOUS +stable_id: mrna_seq_tpm +show_profile_in_analysis_tab: true +profile_name: Normalized gene expression +profile_description: Normalized gene expression levels (TPM) +data_filename: data_expression_tpm.txt diff --git a/public/pnf_serra_nfosi_2023/meta_study.txt b/public/pnf_serra_nfosi_2023/meta_study.txt new file mode 100644 index 0000000000..bd8dfa9992 --- /dev/null +++ b/public/pnf_serra_nfosi_2023/meta_study.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: pnf_serra_nfosi_2023 +type_of_cancer: pnf +name: 'Reprogramming Captures the Genetic and Tumorigenic Properties of Neurofibromatosis Type 1 Plexiform Neurofibromas' +description: Neurofibromatosis type 1 iPSCs gene expression profiling +citation: 'CarriĆ³ M et al. Reprogramming Captures the Genetic and Tumorigenic Properties of Neurofibromatosis Type 1 Plexiform Neurofibromas. Stem Cell Reports. doi: 10.1016/j.stemcr.2019.01.001.' +pmid: 30713041 +groups: PUBLIC +add_global_case_list: true