test_and_deploy.yml

name: tests

on:
  push:
    branches:
      - "main"
    tags:
      - "*"
  pull_request:
  workflow_dispatch:
    inputs:
      coredev:
        description: 'Tests with development version of cellfinder-core?'
        required: true
        default: 'false'

env:
  REGISTRY: ghcr.io
  IMAGE_NAME: ${{ github.repository }}

jobs:
  linting:
    name: Linting
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/lint@v2

  manifest:
    name: Check manifest
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/check_manifest@v2

  test:
    needs: [linting,manifest]
    runs-on: ${{ matrix.os }}
    env:
      INPUT_COREDEV: ${{ github.event.inputs.coredev }}
    strategy:
      fail-fast: false
      matrix:
        # Run across a mixture of Python versions and operating systems
        include:
        - os: macos-latest
          python-version: "3.10"
        - os: windows-latest
          python-version: "3.9"
        - os: ubuntu-latest
          python-version: "3.8"
    steps:
      - uses: neuroinformatics-unit/actions/test@v2
        with:
          python-version: ${{ matrix.python-version }}

  build_sdist_wheels:
    name: Build source distribution
    needs: [test]
    if: github.event_name == 'push' && github.ref_type == 'tag'
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2

  deploy:
    needs: [build_sdist_wheels]
    runs-on: ubuntu-latest
    if: github.event_name == 'push' && github.ref_type == 'tag'
    steps:
      - uses: actions/download-artifact@v3
        with:
          name: artifact
          path: dist
      - uses: pypa/gh-action-pypi-publish@v1.5.0
        with:
          user: __token__
          password: ${{ secrets.TWINE_API_KEY }}

  build-and-push-docker:
    needs: deploy
    runs-on: ubuntu-latest
    permissions:
      contents: read
      packages: write

    steps:
      - name: Checkout repository
        uses: actions/checkout@v2

      - name: Log in to the Container registry
        uses: docker/login-action@f054a8b539a109f9f41c372932f1ae047eff08c9
        with:
          registry: ${{ env.REGISTRY }}
          username: ${{ github.actor }}
          password: ${{ secrets.GITHUB_TOKEN }}

      - name: Extract metadata (tags, labels) for Docker
        id: meta
        uses: docker/metadata-action@98669ae865ea3cffbcbaa878cf57c20bbf1c6c38
        with:
          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}

      - name: Build and push Docker image
        uses: docker/build-push-action@ad44023a93711e3deb337508980b4b5e9bcdc5dc
        with:
          context: .
          push: true
          tags: ${{ steps.meta.outputs.tags }}
          labels: ${{ steps.meta.outputs.labels }}