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Just FYI, this pre-processing should be made flexible. One of the issues with brainreg is that the filtering is great for 10um serial section 2p datasets, and less good for everything else.
Sounds good, we should expose the parameters to the user to set via the UI.
In the same vein I guess we should also expose different filtering strategies! I'm unsure of how to present this via the UI, should we curate a set of filtering strategies and have users pick from those, or should we expose the entire skimage.filters and let users construct their own pipeline?
brainreg
preprocesses the images prior to registration by filtering. We should replicate this functionality.This will need a toggle in the UI, maybe a checkbox right above the
Run
button labelledFilter Images
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