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[Feature] Investigate links with BrainTrawler #76

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adamltyson opened this issue Jul 1, 2024 · 3 comments
Closed

[Feature] Investigate links with BrainTrawler #76

adamltyson opened this issue Jul 1, 2024 · 3 comments
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enhancement New feature or request

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@adamltyson
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BrainTrawler provides a way for users to query public brain data registered to an atlas. It would be great to find a way to do things like:

  • Query/visualise data from BrainGlobe, so users can visualise their own data alongside e.g. public transcriptomic data
  • Allow users to upload their own data to BrainTrawler, after being registered to an atlas.

@adamltyson has spoken to a member of their team, and has the contact if we want to push this forwards. Currently I don't think they have a public API.

@adamltyson adamltyson added the enhancement New feature or request label Jul 1, 2024
@adamltyson
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Spoke to the BrainTrawler team today. A public API could be possible, but that's likely a lot of work on both our sides. I proposed a intermediate step in which a BrainGlobe tool can generate a URL that sends the user to BrainTrawler. Something like:

from brainglobe import BrainTrawlerLink

bt = BrainTrawlerLink("allen_mouse_10um")
bt.generate_link("CP")

@adamltyson
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See also #77 for the more general issue

@adamltyson
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This hasn't been followed up, so closing for now.

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