ENH: parallelize Kaiju classification #200
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #200 +/- ##
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- Coverage 98.73% 97.73% -1.01%
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Files 78 64 -14
Lines 4671 4715 +44
Branches 0 391 +391
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- Hits 4612 4608 -4
+ Misses 59 58 -1
- Partials 0 49 +49 ☔ View full report in Codecov by Sentry. |
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misialq
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VinzentRisch
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ChristosMatzoros
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Sep 23, 2024
Co-authored-by: Christos Konstantinos Matzoros <[email protected]>
VinzentRisch
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Oct 3, 2024
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Closes #199.
QIIME docs on how to use the parallelization can be found here.
To run you'll need any artifact with short reads and a Kaiju DB which can be fetched using the
fetch-kaiju-dbaction.Depends on #201.