Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Data format request for ML #23

Open
helloxwm opened this issue Dec 8, 2020 · 0 comments
Open

Data format request for ML #23

helloxwm opened this issue Dec 8, 2020 · 0 comments

Comments

@helloxwm
Copy link

helloxwm commented Dec 8, 2020 •
edited
Loading

I trying to figure out the code tcga/r_scripts/Run-All-TCGA-Machine-Learning-Comparisons-Across-All-Decontaminated-Data-Types.R, but I feel confused about the input files *.RData. May I know these *.RData (snmDataSampleTypeWithExpStrategyFINAL.RData, snmDataDecontam4Datasets_Nov112019.RData, snmDataAndMetadataDecontamPlateCenter.RData and tcgaPathBinnedData.RData) are made up of what files? Now I only know tcgaVbDataAndMetadataAndSNM.RData consists of Metadata-TCGA-Kraken-17625-Samples.csv and Kraken-TCGA-Raw-Data-17625-Samples.csv. Sorry to bother you.

Thank you for your help to answer my questions.
@helloxwm helloxwm changed the title Data foreormat Data format request for ML Dec 8, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@helloxwm