Multiple_join_paired_ends.py output files names

[chwang740]

Hi,

I have several samples that I need to make join paired ends. Is there a command I can use so that the output file, "fastjoin.join.fastq" can include the sample names? Right now, I am having to rename each join.fastq files.

As an example, I have a sample851_s23_L0001_R1.fastq and sample851_s23_L0001_R2.fastq and when I make the join paired ends, the output file name would just be "fastjoin.join.fastq". Is there a command line you could add in the .Multiple_join_paired_ends.py file so that the output file name could be "sample851_fastjoin.join.fastq"?

Thanks!