UHGGv2 + UHGV MQ+ database with Bracken database for 100bp reads

[CarsonJM]

Hi there, thank you for the great tool! I am wondering if it would be possible to supply a 100bp Bracken database (or the necessary input files) for the UHGGv2 + UHGV MQ+ version.

I have used the original database, which has the capability to take 100bp reads, but think the cluster based family assignments in UHGV will be much more informative than the old morphology-based (i.e. Siphoviridae, Myoviridae... etc) taxonomies in MGV.

Thank you!

[meenachakra]

Hi Carson, definitely! Will supply by Friday.

[CarsonJM]

Fantastic, thank you for the quick reply!

[meenachakra]

No worries, here you go!
database for carson.zip

[rozwalak]

Hi,

thank you for prepare version for 100bp. Could you add this file (and maybe for other read lengths as well) to the folder here https://github.com/bhattlab/phanta/blob/main/databases.md.

I would like to include a link to downloading the database in my pipeline, and including everything there will help me a lot with reproducibility.

Thanks in advance!

Best,
Piotr

[meenachakra]

Hi Piotr,
Sure, will set a reminder to do next week! :)

[yipinto]

Hi Piotr,
Done, check the updated link.
Yishay