diff --git a/chunks/PMID_17121793.txt b/chunks/PMID_17121793.txt index d40845a..cd033da 100644 --- a/chunks/PMID_17121793.txt +++ b/chunks/PMID_17121793.txt @@ -54,29 +54,29 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 53 CASSSDRARDGYT TRBV7-9 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/29 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 54 CASSQLGQSTDTQYF TRBV7-6 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 9/29 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 55 CASSFLLDGYT TRBV5-4 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/29 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 -56 CAMRESISSGSARQLT TRAV14 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 15/22 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 -57 CAMRESTSSGSARQLT TRAV14 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/22 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 -58 CAMRESVSGANNLF TRAV14 TRAJ36 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 4/22 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 -59 CAMRESVSGVNNLF TRAV14 TRAJ49-1 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/22 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 +56 CAMRESISSGSARQLT TRAV14/DV4 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 15/22 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 +57 CAMRESTSSGSARQLT TRAV14/DV4 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/22 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 +58 CAMRESVSGANNLF TRAV14/DV4 TRAJ36 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 4/22 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 +59 CAMRESVSGVNNLF TRAV14/DV4 TRAJ49-1 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/22 sanger CD8+ HIV-infected,HLA-B*57:03 L8227 KF11 PBMC HLA-B*57:03 60 CASSSWEGLDTQY TRBV7-6 TRBJ2-3 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 19/27 sanger CD8+ HIV-infected,HLA-B*57:03 020018 KF11 PBMC HLA-B*57:03 61 CASSLVSNYGYT TRBV5-8 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/27 sanger CD8+ HIV-infected,HLA-B*57:03 020018 KF11 PBMC HLA-B*57:03 62 CSVEDPDRPSYGYT TRBV29-1 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 5/27 sanger CD8+ HIV-infected,HLA-B*57:03 020018 KF11 PBMC HLA-B*57:03 63 CASSGLGGYT TRBV7-9 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/27 sanger CD8+ HIV-infected,HLA-B*57:03 020018 KF11 PBMC HLA-B*57:03 64 CSVKGQGDTELF TRBV29-1 TRBJ2-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/27 sanger CD8+ HIV-infected,HLA-B*57:03 020018 KF11 PBMC HLA-B*57:03 -65 CAMRESVSSGSARQLT TRAV14 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 25/25 sanger CD8+ HIV-infected,HLA-B*57:03 020018 KF11 PBMC HLA-B*57:03 +65 CAMRESVSSGSARQLT TRAV14/DV4 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 25/25 sanger CD8+ HIV-infected,HLA-B*57:03 020018 KF11 PBMC HLA-B*57:03 66 CATSDLRGGKF TRBV24-1 TRBJ2-1 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 13/31 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 67 CASEDSSDGANYGYT TRBV7-9 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 6/31 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 68 CVSEDSSDGANYGYT TRBV7-9 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/31 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 69 CASEAGNTIY TRBV7-9 TRBJ1-3 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/31 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 70 CASSWSGGQRGYT TRBV7-9 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 9/31 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 -71 CAMRDPRSKII TRAV14 TRAJ3 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 11/20 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 -72 CAMRESVSGANNLF TRAV14 TRAJ36 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 4/20 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 -73 CAMRESVSGNNRLA TRAV14 TRAJ7 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 4/20 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 -74 CAMREGVNQGGKLI TRAV14 TRAJ23 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/20 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 +71 CAMRDPRSKII TRAV14/DV4 TRAJ3 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 11/20 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 +72 CAMRESVSGANNLF TRAV14/DV4 TRAJ36 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 4/20 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 +73 CAMRESVSGNNRLA TRAV14/DV4 TRAJ7 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 4/20 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 +74 CAMREGVNQGGKLI TRAV14/DV4 TRAJ23 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/20 sanger CD8+ HIV-infected,HLA-B*57:03 120024 KF11 PBMC HLA-B*57:03 75 CASSRQGFT TRBV28 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 23/36 sanger CD8+ HIV-infected,HLA-B*57:03 013196G KF11 PBMC HLA-B*57:03 76 CASSPRDSKETQY TRBV14 TRBJ2-5 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 6/36 sanger CD8+ HIV-infected,HLA-B*57:03 013196G KF11 PBMC HLA-B*57:03 77 CASSLAGGQETQY TRBV5-6 TRBJ2-5 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 7/36 sanger CD8+ HIV-infected,HLA-B*57:03 013196G KF11 PBMC HLA-B*57:03 -78 CAMRESISSGSARQLT TRAV14 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 26/26 sanger CD8+ HIV-infected,HLA-B*57:03 013196G KF11 PBMC HLA-B*57:03 +78 CAMRESISSGSARQLT TRAV14/DV4 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 26/26 sanger CD8+ HIV-infected,HLA-B*57:03 013196G KF11 PBMC HLA-B*57:03 79 CASSYSDGNEAF TRBV6-6 TRBJ1-1 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/31 sanger CD8+ HIV-infected,HLA-B*57:03 CR0464T KF11 PBMC HLA-B*57:03 80 CASSLAGTQETQY TRBV5-6 TRBJ2-5 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 6/31 sanger CD8+ HIV-infected,HLA-B*57:03 CR0464T KF11 PBMC HLA-B*57:03 81 CASSSAGTQETQY TRBV5-6 TRBJ2-5 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/31 sanger CD8+ HIV-infected,HLA-B*57:03 CR0464T KF11 PBMC HLA-B*57:03 @@ -87,7 +87,7 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 86 CASSPYAGSEQF TRBV27 TRBJ2-1 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 31/31 sanger CD8+ HIV-infected,HLA-B*57:03 01479D KF11 PBMC HLA-B*57:03 87 CASSLGASISYEQY TRBV7-8 TRBJ2-7 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/27 sanger CD8+ HIV-infected,HLA-B*57:03 2385 KF11 PBMC HLA-B*57:03 88 CATSGEGQGGPYGYT TRBV15 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 26/27 sanger CD8+ HIV-infected,HLA-B*57:03 2385 KF11 PBMC HLA-B*57:03 -89 CAMRESVSGYNKLI TRAV14 TRAJ4 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 29/29 sanger CD8+ HIV-infected,HLA-B*57:03 2385 KF11 PBMC HLA-B*57:03 +89 CAMRESVSGYNKLI TRAV14/DV4 TRAJ4 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 29/29 sanger CD8+ HIV-infected,HLA-B*57:03 2385 KF11 PBMC HLA-B*57:03 90 CAGSLSNGYT TRBV7-9 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/13 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 91 CASSGTASFDEQF TRBV9 TRBJ2-1 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/13 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 92 CASSGTTSFDEQF TRBV9 TRBJ2-1 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/13 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 @@ -96,10 +96,10 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 95 CASSESRMGSQANYGYT TRBV25-1 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/13 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 96 CVSSESRMGSQANYGYT TRBV25-1 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/13 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 97 CAASLNSGGYQKVT TRAV13-1 TRAJ13-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 12/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 -98 CAMRESISSGSARQLT TRAV14 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 9/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 -99 CAMREGVNQGGKLI TRAV14 TRAJ23 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 3/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 -100 CAMRDSVAAGNKLT TRAV14 TRAJ17 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 -101 CAMRESVAGANNLF TRAV14 TRAJ36 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 +98 CAMRESISSGSARQLT TRAV14/DV4 TRAJ22 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 9/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 +99 CAMREGVNQGGKLI TRAV14/DV4 TRAJ23 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 3/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 +100 CAMRDSVAAGNKLT TRAV14/DV4 TRAJ17 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 1/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 +101 CAMRESVAGANNLF TRAV14/DV4 TRAJ36 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 2/27 sanger CD8+ HIV-infected,HLA-B*57:03 100089 KF11 PBMC HLA-B*57:03 102 CASSLAGTQETQY TRBV5-6 TRBJ2-5 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 21/25 sanger CD8+ HIV-infected,HLA-B*57:03 SKI-183-P2 KF11 PBMC HLA-B*57:03 103 CASSLAETSADGYT TRBV5-1 TRBJ1-2 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 4/25 sanger CD8+ HIV-infected,HLA-B*57:03 SKI-183-P2 KF11 PBMC HLA-B*57:03 104 CASSSFLSSGETQY TRBV28 TRBJ2-5 HomoSapiens HLA-B*57:01 B2M MHCI KAFSPEVIPMF Gag HIV-1 PMID:17121793 tetramer-sort 31/32 sanger CD8+ HIV-infected,HLA-B*57:03 PS-579-PD KF11 PBMC HLA-B*57:03 diff --git a/chunks/PMID_20139278.txt b/chunks/PMID_20139278.txt index 5c1f137..992d525 100644 --- a/chunks/PMID_20139278.txt +++ b/chunks/PMID_20139278.txt @@ -2,21 +2,21 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 1 CALSEASSWGKLQF TRAV19 CASRVQGRDNEQFF TRBV12-4 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 cla sanger CD8+CLA+ HSV-2+ 5 1B1 PBMC 2 CALSEADSWGKLQF TRAV19 CASRVQGRDNEQFF TRBV12-4 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 cla sanger CD8+CLA+ HSV-2+ 5 2F1 PBMC 3 CVASGGTGKLIF TRAV12-1 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 L4 PBMC -4 CAEGDSWGKLQF TRAV23 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 L4 PBMC +4 CAEGDSWGKLQF TRAV23/DV6 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 L4 PBMC 5 CALSGSGDSWGKLQF TRAV19 CASRPQGREETQYF TRBV12-4 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 L7 PBMC 6 CILRGSGTYKYIF TRAV26-2 CASRIWGGADTQYF TRBV5-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger CD8+ HSV-2+ 5 L10 PBMC 7 CILRGSGTYKYIF TRAV26-2 CASRIWGGADTQYF TRBV5-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 L23 PBMC 8 CAVYMDSSYKLIF TRAV22 CASSEWTVDGYTF TRBV2 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 L35 PBMC -9 CAEGDSWGKLQF TRAV23 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 L40 PBMC -10 CAEGDSWGKLQF TRAV23 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H21 PBMC -11 CAEGDSWGKLQF TRAV23 CSALRDNYNSPLHF TRBV20-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H24 PBMC -12 CAAFQGAQKLVF TRAV29 CSALRDNYNSPLHF TRBV20-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H24 PBMC +9 CAEGDSWGKLQF TRAV23/DV6 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 L40 PBMC +10 CAEGDSWGKLQF TRAV23/DV6 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H21 PBMC +11 CAEGDSWGKLQF TRAV23/DV6 CSALRDNYNSPLHF TRBV20-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H24 PBMC +12 CAAFQGAQKLVF TRAV29/DV5 CSALRDNYNSPLHF TRBV20-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H24 PBMC 13 CVASGGTGKLIF TRAV12-1 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H32 PBMC 14 CILRGSGTYKYIF TRAV26-2 CASRIWGGADTQYF TRBV5-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H33 PBMC 15 CVASGGTGKLIF TRAV12-1 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H37 PBMC -16 CAEGDSWGKLQF TRAV23 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H37 PBMC +16 CAEGDSWGKLQF TRAV23/DV6 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H37 PBMC 17 CVASGGTGKLIF TRAV12-1 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H40 PBMC -18 CAEGDSWGKLQF TRAV23 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H40 PBMC +18 CAEGDSWGKLQF TRAV23/DV6 CATSEAASSWTGELFF TRBV24-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5 H40 PBMC 19 CAYSRLGTDQLIF TRAV38-2 CASRLTGEKQETQYF TRBV7-3 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 9 16 PBMC 20 CLVGSVGAGSYQLTF TRAV4 CATRIGWGTDTQYF TRBV5-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 9 23 PBMC 21 CAFMKPAGGGGDYKLT TRAV38-1 CASSVWGTDTQYF TRBV9 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 9 24 PBMC @@ -68,7 +68,7 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 67 CLVGASGAGSYQLTF TRAV4 CASSDSYRGSYNEQFF TRBV6-4 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 tetramer-sort sanger CD8+ HSV-2+ 13 38 PBMC 68 CALGGDYGGSQGNLIF TRAV9-2 CASREWGGTDTQYF TRBV5-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 tetramer-sort sanger CD8+ HSV-2+ 13 48 PBMC 69 CALKISGSGYALNF TRAV19 CASRKTGGGEAFF TRBV7-3 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5491 W2 CTL culture -70 CAMREAGGFKTIF TRAV14 CASRKTGGGEAFF TRBV7-3 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5491 W2 CTL culture +70 CAMREAGGFKTIF TRAV14/DV4 CASRKTGGGEAFF TRBV7-3 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5491 W2 CTL culture 71 CALDSDGQKLLF TRAV19 CASSTDSVDEQFF TRBV5-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5491 W5 CTL culture 72 CALDSDGQKLLF TRAV19 CASSTDSVDEQFF TRBV5-1 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5491 W9 CTL culture 73 CALSEAGGDSWGKLQF TRAV19 CASRRQGRDNEQFF TRBV12-4 HomoSapiens HLA-B*07:02 B2M MHCI RPRGEVRFL UL49 HSV-2 PMID:20139278 peptide-restimulation,tetramer-sort sanger antigen-loaded-targets CD8+ HSV-2+ 5491 W14 CTL culture diff --git a/chunks/PMID_27645996.txt b/chunks/PMID_27645996.txt index 97585c3..33fc773 100644 --- a/chunks/PMID_27645996.txt +++ b/chunks/PMID_27645996.txt @@ -2,19 +2,19 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 1 CAVRDGTANNLFF TRAV3 TRAJ36 CASSISSTGELFF TRBV19 TRBJ2-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 5/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 2 CAFMKDAGGTSYGKLTF TRAV38-1 TRAJ52 CASSIGVYGYTF TRBV19 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 4/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 3 CAGGGSQGNLIF TRAV27 TRAJ42 CASSIRSSYEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 2/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 -4 CALAGSQGNLIF TRAV23 TRAJ42 CASSIRASYEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 4/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 +4 CALAGSQGNLIF TRAV23/DV6 TRAJ42 CASSIRASYEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 4/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 5 CAGADGGSQGNLIF TRAV27 TRAJ42 CASSGRAAGELFF TRBV19 TRBJ2-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 2/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 6 CAAGGSQGNLIF TRAV27 TRAJ42 CASSVRSSYEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 2/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 7 CAAPPSNTGKLIF TRAV3 TRAJ37 CASSTRAADTQYF TRBV19 TRBJ2-3 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 8 CAVRDLLTNAGKSTF TRAV3 TRAJ27 CASSGTSGTEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 9 CAENMGGGSQGNLIF TRAV13-2 TRAJ42 CASSIRAGETQYF TRBV19 TRBJ2-5 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 -10 CAMRDGGGSQGNLIF TRAV14 TRAJ42 CASSIRSGAEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 +10 CAMRDGGGSQGNLIF TRAV14/DV4 TRAJ42 CASSIRSGAEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 11 CAVAPTGNVLHC TRAV20 TRAJ35 CASSIRSTGELFF TRBV19 TRBJ2-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 12 CAGAGSQGNLIF TRAV27 TRAJ42 CASSVRSSYEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 13 CAGGLGGGSQGNLIF TRAV27 TRAJ42 CASSIRAAYEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 14 CAGADGGSQGNLIF TRAV27 TRAJ42 CASSISSTGELFF TRBV19 TRBJ2-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 15 CAGGGSSNTGKLIF TRAV27 TRAJ37 CASSIRSSYEQYF TRBV19 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 -16 CPGGSQGNLIF TRAV29 TRAJ42 CASSIGVYGYTF TRBV19 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 +16 CPGGSQGNLIF TRAV29/DV5 TRAJ42 CASSIGVYGYTF TRBV19 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 17 CGTGGSQGNLIF TRAV30 TRAJ42 CSSVRSADTQYF TRBV19 TRBJ2-3 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 18 CAFMINAGGTSYGKLTF TRAV38-1 TRAJ52 CASSIGSYGYTF TRBV19 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 19 CAYGTNAGGTSYGKLTF TRAV38-2 TRAJ52 CASSIGVYGYTF TRBV19 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI GILGFVFTL M InfluenzaA PMID:27645996 tetramer-sort,beads 1/32 yes sanger CD8+ healthy H1 M1 PBMC HLA-A*02:01,HLA-A*11:01,HLA-B*35:01,HLA-B*39:01 @@ -61,7 +61,7 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 60 CAESTGKLIF TRAV5 TRAJ37 CSVGTGGTNEKLFF TRBV29-1 TRBJ1-4 HomoSapiens HLA-A*02:01 B2M MHCI GLCTLVAML BMLF1 EBV PMID:27645996 tetramer-sort,beads 6/27 yes sanger CD8+ healthy H3 BMLF-1 PBMC HLA-A*02:01,HLA-A*03:02,HLA-B*18:01,HLA-B*35:08 61 CAEDNNARLMF TRAV5 TRAJ31 CSARIGVGNTIYF TRBV20-1 TRBJ1-3 HomoSapiens HLA-A*02:01 B2M MHCI GLCTLVAML BMLF1 EBV PMID:27645996 tetramer-sort,beads 1/27 yes sanger CD8+ healthy H3 BMLF-1 PBMC HLA-A*02:01,HLA-A*03:02,HLA-B*18:01,HLA-B*35:08 62 CADPIEDAGNMLTF TRAV8-3 TRAJ39 CASSDGQLTAGELFF TRBV9 TRBJ2-2 HomoSapiens HLA-A*02:01 B2M MHCI GLCTLVAML BMLF1 EBV PMID:27645996 tetramer-sort,beads 1/27 yes sanger CD8+ healthy H3 BMLF-1 PBMC HLA-A*02:01,HLA-A*03:02,HLA-B*18:01,HLA-B*35:08 -63 CAATDNTDKLIF TRAV29 TRAJ34 CASSRLGDYTF TRBV4-1 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI GLCTLVAML BMLF1 EBV PMID:27645996 tetramer-sort,beads 1/27 yes sanger CD8+ healthy H3 BMLF-1 PBMC HLA-A*02:01,HLA-A*03:02,HLA-B*18:01,HLA-B*35:08 +63 CAATDNTDKLIF TRAV29/DV5 TRAJ34 CASSRLGDYTF TRBV4-1 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI GLCTLVAML BMLF1 EBV PMID:27645996 tetramer-sort,beads 1/27 yes sanger CD8+ healthy H3 BMLF-1 PBMC HLA-A*02:01,HLA-A*03:02,HLA-B*18:01,HLA-B*35:08 64 CAGQSNAGGTSYGKLTF TRAV35 TRAJ52 CSVEDGYEQYF TRBV29-1 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI CVNGSCFTV InfluenzaA PMID:27645996 tetramer-sort,beads 3/7 yes sanger CD8+ healthy H4 NA-231 PBMC HLA-A*02:01,HLA-A*25:01,HLA-B*07:02,HLA-B*18:01 65 CAPMDSNYQLIW TRAV1-2 TRAJ33 CASSNSEGSGANVLTF TRBV19 TRBJ2-6 HomoSapiens HLA-A*02:01 B2M MHCI CVNGSCFTV InfluenzaA PMID:27645996 tetramer-sort,beads 1/7 yes sanger CD8+ healthy H4 NA-231 PBMC HLA-A*02:01,HLA-A*25:01,HLA-B*07:02,HLA-B*18:01 66 CALPYNAGNNRKLIW TRAV6 TRAJ38 CASSPLYVALREQYF TRBV14 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI CVNGSCFTV InfluenzaA PMID:27645996 tetramer-sort,beads 1/7 yes sanger CD8+ healthy H4 NA-231 PBMC HLA-A*02:01,HLA-A*25:01,HLA-B*07:02,HLA-B*18:01 @@ -79,7 +79,7 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 78 CLVGAGNMLTF TRAV4 TRAJ39 CASSQGGQGAPYEQYF TRBV4 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/5 yes sanger CD8+ healthy H5 NS3-1073 PBMC A02,A24,B07,B40 79 CAESGGSQGNLIF TRAV5 TRAJ42 CASSQAENTEAFF TRBV4-1 TRBJ1-1 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/5 yes sanger CD8+ healthy H5 NS3-1073 PBMC A02,A24,B07,B40 80 CAVSSLMDTGRRALTF TRAV8-2 TRAJ5 CASSLLGLAGVGELFF TRBV28 TRBJ2-2 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/5 yes sanger CD8+ healthy H5 NS3-1073 PBMC A02,A24,B07,B40 -81 CAMREDAGGTSYGKLTF TRAV14 TRAJ52 CASSLTGTGFKQFF TRBV28 TRBJ2-1 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/5 yes sanger CD8+ healthy H5 NS3-1073 PBMC A02,A24,B07,B40 +81 CAMREDAGGTSYGKLTF TRAV14/DV4 TRAJ52 CASSLTGTGFKQFF TRBV28 TRBJ2-1 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/5 yes sanger CD8+ healthy H5 NS3-1073 PBMC A02,A24,B07,B40 82 CILRDLDGGTSYGKLTF TRAV26-2 TRAJ52 CASSLTLAGGIGTDTQYF TRBV28 TRBJ2-3 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/5 yes sanger CD8+ healthy H5 NS3-1073 PBMC A02,A24,B07,B40 83 CPFQTGANNLFF TRAV4 TRAJ36 CASSLGTGAPYEQYF TRBV7-2 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/5 yes sanger CD8+ healthy H6 NS3-1073 PBMC A02,A02,B18,B18 84 CLVGAPGPGNTPLVF TRAV4 TRAJ43 CATSNLDSFGGYTF TRBV15 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/5 yes sanger CD8+ healthy H6 NS3-1073 PBMC A02,A02,B18,B18 @@ -92,11 +92,11 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 91 CAESGGYQKVTF TRAV5 TRAJ13 CASSQEKGTEAFF TRBV4 TRBJ1-1 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 11/29 yes sanger CD8+ HCV-infected HCV-1 NS3-1073 PBMC HLA-A*02:01,HLA-A*03:01,HLA-B*08:01,HLA-B*40:23 92 CLVGVPVGAGSYQLTF TRAV4 TRAJ28 CASTTGSSEKLFF TRBV2 TRBJ1-4 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 7/29 yes sanger CD8+ HCV-infected HCV-1 NS3-1073 PBMC HLA-A*02:01,HLA-A*03:01,HLA-B*08:01,HLA-B*40:23 93 CLVVGDNYGQNFVF TRAV4 TRAJ26 CATSTTFQTDYAEPYGYTF TRBV15 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 5/29 yes sanger CD8+ HCV-infected HCV-1 NS3-1073 PBMC HLA-A*02:01,HLA-A*03:01,HLA-B*08:01,HLA-B*40:23 -94 CAASARGNQGGKLIF TRAV29 TRAJ23 CASSVDEGNTGELFF TRBV9 TRBJ2-2 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 2/29 yes sanger CD8+ HCV-infected HCV-1 NS3-1073 PBMC HLA-A*02:01,HLA-A*03:01,HLA-B*08:01,HLA-B*40:23 +94 CAASARGNQGGKLIF TRAV29/DV5 TRAJ23 CASSVDEGNTGELFF TRBV9 TRBJ2-2 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 2/29 yes sanger CD8+ HCV-infected HCV-1 NS3-1073 PBMC HLA-A*02:01,HLA-A*03:01,HLA-B*08:01,HLA-B*40:23 95 CAYRSATFSGGGADGLTF TRAV38-2 TRAJ45 CASSRPVGLFNYGYTF TRBV28 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 2/29 yes sanger CD8+ HCV-infected HCV-1 NS3-1073 PBMC HLA-A*02:01,HLA-A*03:01,HLA-B*08:01,HLA-B*40:23 96 CLVGEGDTGGFKTIF TRAV4 TRAJ9 CASSQVQTEPSGYTF TRBV4 TRBJ1-2 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/29 yes sanger CD8+ HCV-infected HCV-1 NS3-1073 PBMC HLA-A*02:01,HLA-A*03:01,HLA-B*08:01,HLA-B*40:23 97 CLVGGGADGLTF TRAV4 TRAJ45 CASSQEVTVPTYEQYF TRBV16 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/29 yes sanger CD8+ HCV-infected HCV-1 NS3-1073 PBMC HLA-A*02:01,HLA-A*03:01,HLA-B*08:01,HLA-B*40:23 98 CLDSNDMRF TRAV4 TRAJ43 CASSQAQSGTAPYEQYF TRBV4 TRBJ2-7 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 18/30 yes sanger CD8+ HCV-infected HCV-2 NS3-1073 PBMC HLA-A*02:01,HLA-A*03,HLA-B*38:01,HLA-B*45:01 -99 CAMREFTSGTYKYIF TRAV14 TRAJ40 CASSLTLGLAGVETQYF TRBV27 TRBJ2-5 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 8/30 yes sanger CD8+ HCV-infected HCV-2 NS3-1073 PBMC HLA-A*02:01,HLA-A*03,HLA-B*38:01,HLA-B*45:01 +99 CAMREFTSGTYKYIF TRAV14/DV4 TRAJ40 CASSLTLGLAGVETQYF TRBV27 TRBJ2-5 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 8/30 yes sanger CD8+ HCV-infected HCV-2 NS3-1073 PBMC HLA-A*02:01,HLA-A*03,HLA-B*38:01,HLA-B*45:01 100 CLVGSPNDYKLSF TRAV4 TRAJ20 CASSSPSGRPTLYNEQFF TRBV27 TRBJ2-1 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 3/30 yes sanger CD8+ HCV-infected HCV-2 NS3-1073 PBMC HLA-A*02:01,HLA-A*03,HLA-B*38:01,HLA-B*45:01 101 CAYSGIKAAGNKLTF TRAV38-2 TRAJ17 CATSRDPQYQPQHF TRBV15 TRBJ1-5 HomoSapiens HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:27645996 tetramer-sort,beads 1/30 yes sanger CD8+ HCV-infected HCV-2 NS3-1073 PBMC HLA-A*02:01,HLA-A*03,HLA-B*38:01,HLA-B*45:01