AGR Curation v0.19.1

What's Changed

• Release/v0.19.1 by @markquintontulloch in #1058

Full Changelog: v0.19.0...v0.19.1

AGR Curation Prerelease v0.20.0-rc1

What's Changed

• SCRUM-2898: agr_curation beta to prod release/v0.18.0 by @abecerra in #1035
• SCRUM-2333, SCRUM-2334, SCRUM- 2341 - Add allele functional impacts, germline transmission status, and notes by @markquintontulloch in #1033
• SCRUM-2898: beta to prod release by @abecerra in #1037
• SCRUM-2897: alpha to beta release by @abecerra in #1039
• SCRUM-2341 (update) Increase number of terms returned by search for CV dropdown by @markquintontulloch in #1036
• SCRUM-2334 update - Fix display for functional impacts by @markquintontulloch in #1040
• SCRUM-2341 update - Allele note UI updates by @markquintontulloch in #1041
• SCRUM-2341 update - Add missing term to allele note vocabulary by @markquintontulloch in #1042
• Updated ngram count SCRUM-2930 by @oblodgett in #1043
• Fix for indexes and constraints by @oblodgett in #1044
• added private only view by @adamgibs in #1046
• SCRUM-2900 added more mock table data and tests by @adamgibs in #1047
• Scrum 2932 added no cleanup feature by @oblodgett in #1045
• Bump for Release by @oblodgett in #1049
• Release/v0.20.0 rc1 by @adamgibs in #1056

Full Changelog: v0.19.0-rc1...v0.20.0-rc1

AGR Curation v0.19.0

What's Changed

• SCRUM-2449 added HP Ontology by @adamgibs in #1008
• PRmerge/production by @markquintontulloch in #1010
• SCRUM-2830 Migration to populate null data providers by @markquintontulloch in #1012
• PRmerge/beta by @markquintontulloch in #1016
• SCRUM-2773 fixed tooltip superscripts on GenesTable by @adamgibs in #1013
• SCRUM-2838 fixed row cancel error by @adamgibs in #1017
• SCRUM-2870 Fix gene table tooltips by @markquintontulloch in #1019
• SCRUM-2838 updated row index for Autocomplete editors by @adamgibs in #1020
• SCRUM-2836 Synchronise with LinkML v1.7.1 by @markquintontulloch in #1018
• SCRUM-2885 Fix popup dialog autocomplete selection bug by @markquintontulloch in #1022
• SCRUM-2836 update - Fix geneticModifiers autocomplete by @markquintontulloch in #1023
• SCRUM-2841 Remove legacy secondary IDs by @markquintontulloch in #1024
• SCRUM-2841 update - Remove deprecated secondaryId index references by @markquintontulloch in #1025
• SCRUM-2342 Display and enable editing of allele synonyms by @markquintontulloch in #1021
• SCRUM-2890 Sort out display/format text in UI code by @markquintontulloch in #1026
• SCRUM-2800 Loading of gene secondary IDs and display of gene slot annotation fields by @markquintontulloch in #1027
• SCRUM-2891 Enable specification of object type in pending edit tooltip by @markquintontulloch in #1028
• SCRUM-2342 update - Fix table name by @markquintontulloch in #1029
• SCRUM-2877 added basic component tests to most data tables by @adamgibs in #1031
• LinkML version change by @markquintontulloch in #1032
• SCRUM-2898: agr_curation beta to prod release/v0.18.0 by @abecerra in #1035
• SCRUM-2897: alpha to beta release/v0.19.0 rc1 by @abecerra in #1038
• SCRUM-2947: agr_curation release v0.19.0 by @abecerra in #1053

Full Changelog: v0.18.0...v0.19.0

AGR Curation Prerelease v0.19.0-rc1

What's Changed

• SCRUM-2449 added HP Ontology by @adamgibs in #1008
• PRmerge/production by @markquintontulloch in #1010
• SCRUM-2830 Migration to populate null data providers by @markquintontulloch in #1012
• PRmerge/beta by @markquintontulloch in #1016
• SCRUM-2773 fixed tooltip superscripts on GenesTable by @adamgibs in #1013
• SCRUM-2838 fixed row cancel error by @adamgibs in #1017
• SCRUM-2870 Fix gene table tooltips by @markquintontulloch in #1019
• SCRUM-2838 updated row index for Autocomplete editors by @adamgibs in #1020
• SCRUM-2836 Synchronise with LinkML v1.7.1 by @markquintontulloch in #1018
• SCRUM-2885 Fix popup dialog autocomplete selection bug by @markquintontulloch in #1022
• SCRUM-2836 update - Fix geneticModifiers autocomplete by @markquintontulloch in #1023
• SCRUM-2841 Remove legacy secondary IDs by @markquintontulloch in #1024
• SCRUM-2841 update - Remove deprecated secondaryId index references by @markquintontulloch in #1025
• SCRUM-2342 Display and enable editing of allele synonyms by @markquintontulloch in #1021
• SCRUM-2890 Sort out display/format text in UI code by @markquintontulloch in #1026
• SCRUM-2800 Loading of gene secondary IDs and display of gene slot annotation fields by @markquintontulloch in #1027
• SCRUM-2891 Enable specification of object type in pending edit tooltip by @markquintontulloch in #1028
• SCRUM-2342 update - Fix table name by @markquintontulloch in #1029
• SCRUM-2877 added basic component tests to most data tables by @adamgibs in #1031
• LinkML version change by @markquintontulloch in #1032
• SCRUM-2897: alpha to beta release/v0.19.0 rc1 by @abecerra in #1038

Full Changelog: v0.18.0-rc1...v0.19.0-rc1

AGR Curation v0.18.0

What's Changed

• PRmerge/beta by @markquintontulloch in #988
• New annotation pop up rearrangement done. by @kthorat-prog in #990
• SCRUM-2457 by @adamgibs in #991
• SCRUM-2383 Re-enable editing of allele symbol and name by @markquintontulloch in #992
• SCRUM-2383 Update - Increase width of dialog for allele name and symbol by @markquintontulloch in #997
• PRmerge/production by @markquintontulloch in #1000
• SCRUM-2450 load PATO into database by @cmpich in #995
• PRmerge/production by @markquintontulloch in #1002
• SCRUM-2449 adding HP ontology by @cmpich in #1003
• SCRUM-2383 update by @markquintontulloch in #999
• SCRUM-2840: Use gene symbol by @abecerra in #1004
• SCRUM-2450 add @indexed and remove @Inheritance by @cmpich in #1006
• SCRUM-2450 fix endpoint call for PATO by @cmpich in #1007
• PRmerge/production by @markquintontulloch in #1011
• Release/v0.18.0-rc1 by @markquintontulloch in #1015

Full Changelog: v0.17.3...v0.18.0

AGR Curation Prerelease v0.18.0-rc1

What's Changed

• PRmerge/beta by @markquintontulloch in #988
• New annotation pop up rearrangement done. by @kthorat-prog in #990
• SCRUM-2457 by @adamgibs in #991
• SCRUM-2383 Re-enable editing of allele symbol and name by @markquintontulloch in #992
• SCRUM-2383 Update - Increase width of dialog for allele name and symbol by @markquintontulloch in #997
• PRmerge/production by @markquintontulloch in #1000
• SCRUM-2450 load PATO into database by @cmpich in #995
• PRmerge/production by @markquintontulloch in #1002
• SCRUM-2449 adding HP ontology by @cmpich in #1003
• SCRUM-2383 update by @markquintontulloch in #999
• SCRUM-2840: Use gene symbol by @abecerra in #1004
• SCRUM-2450 add @indexed and remove @Inheritance by @cmpich in #1006
• SCRUM-2450 fix endpoint call for PATO by @cmpich in #1007
• PRmerge/production by @markquintontulloch in #1011
• Release/v0.18.0-rc1 by @markquintontulloch in #1015

Full Changelog: v0.17.3...v0.18.0-rc1

AGR Curation v0.17.3

What's Changed

• SCRUM-2830 Fix null data provider on failed bulk load update bug by @markquintontulloch in #1009

Full Changelog: v0.17.2...v0.17.3

AGR Curation v0.17.2

What's Changed

• Fix FK errors introduced by migration by @markquintontulloch in #1001

Full Changelog: v0.17.1...v0.17.2

AGR Curation v0.17.1

What's Changed

• Fixed migration to use indexes by @oblodgett in #996

Full Changelog: v0.17.0...v0.17.1

AGR Curation v0.17.0

What's Changed

• Upgrade java to 17 by @oblodgett in #889
• SCRUM-2458 & SCRUM-2173 CrossReference and DataProvider updates and autopopulation by @markquintontulloch in #888
• SCRUM-2512 Fix failed validation of valid publications by @markquintontulloch in #890
• SCRUM-2522 Fix slack commit message reporting on deployment to alpha by @mluypaert in #892
• Added code to incrementally update parents and ancestors by @oblodgett in #893
• SCRUM-2458 Additional indexes and xref update fixes by @markquintontulloch in #894
• Fix for maven deploy by @oblodgett in #896
• SCRUM-2512 (mk2) Use literature service keyword search by @markquintontulloch in #895
• SCRUM-2173 pt. 2 Get AllianceMember from authenticatedUser by @markquintontulloch in #897
• Default staff added to list of mods by @kthorat-prog in #898
• SCRUM-2518: bump quarkus to 2.16.1 by @abecerra in #900
• Fix missing & duplicate indexes by @markquintontulloch in #899
• SCRUM-2530: update beanstalk-deploy to v21 by @abecerra in #901
• rename run_es to run_opensearch and create a temporary script by @cmpich in #886
• Merge pull request #891 from alliance-genome/release/v0.15.0 by @kthorat-prog in #902
• Added code for global reset rework by @oblodgett in #903
• Reuse existing SlotAnnotation objects for bulk loads by @markquintontulloch in #904
• SCRUM-2458 update to fix ontology load by @markquintontulloch in #905
• SCRUM-2550 Duplicate key fix by @markquintontulloch in #906
• SCRUM-2550 Refactor identity helper by @markquintontulloch in #907
• Changed default table state to blank by @oblodgett in #909
• More gh-actions deprecation cleanup by @mluypaert in #908
• Reindex improvements by @mluypaert in #910
• SCRUM-2515 upgraded to PrimeReact 8.7 by @adamgibs in #912
• mergeback v0.16.0-rc2 to alpha by @mluypaert in #914
• Improved github release creation and merge-back instructions by @mluypaert in #915
• SCRUM-2515 by @adamgibs in #916
• Added forgotten full text field by @oblodgett in #918
• Mergeback v0.16.0 to alpha by @mluypaert in #920
• SCRUM-2599: Fixed UI PR-validation + upgraded container Node version to v16 (from v12) by @mluypaert in #922
• SCRUM-1907 Enable deletion of disease annotations from persistent store with appropriate constraints by @markquintontulloch in #921
• SCRUM-2594 - Fix data load exceptions display bug by @markquintontulloch in #923
• Fix FB curie generation null pointer error by @markquintontulloch in #925
• SCRUM-2593 Order data loads by date by @markquintontulloch in #924
• Release v0.17.0 rc1 by @abecerra in #928
• SCRUM-2592 Fix transaction timeout on gene load cleanup (allele + AGM too) by @markquintontulloch in #929
• SCRUM-2601 Integration tests for creation of objects with only required fields by @markquintontulloch in #926
• Readme deployment improvements by @mluypaert in #930
• SCRUM-2592 update - Fix data loads cleanup errors by @markquintontulloch in #931
• SCRUM-2593 update - Fix date sorting by @markquintontulloch in #933
• PRmerge beta for release/v0.17.0-rc1 by @abecerra in #932
• Fix-experimantal-typo by @chris-grove in #935
• SCRUM-2593 update 2 - More load and file sorting by @markquintontulloch in #936
• Added boosting code for exact matches by @oblodgett in #937
• SCRUM-2282: test scaffold by @abecerra in #917
• SCRUM-2282: change var for let by @abecerra in #938
• Update OpenSearch test container start timeout by @mluypaert in #940
• SCRUM-2627 Prevent loading of files not within supported schema range by @markquintontulloch in #939
• Removed Column by @oblodgett in #941
• SCRUM-2625 Update WB default settings for DA table by @markquintontulloch in #942
• SCRUM-2446 WB Phenotype ontology loading by @mluypaert in #943
• SCRUM-2446 fix WB phenotype ontology sidebar table link by @mluypaert in #945
• SCRUM-2282 add UI test by @adamgibs in #946
• SCRUM-2282: unit test for AGM Table by @abecerra in #947
• SCRUM-2658 / SCRUM-2659 Fix indexing of slotAnnotations on insert by @markquintontulloch in #950
• SCRUM-2660 Clean up redundant entries in slot annotation tables by @markquintontulloch in #951
• SCRUM-2650 by @oblodgett in #948
• SCRUM-2654 added individual table resets in profilePage by @adamgibs in #952
• Release/v0.17.0 rc2 by @abecerra in #955
• SCRUM-2509 switched DataProvider filter to multiselect by @adamgibs in #956
• SCRUM-2509 by @adamgibs in #957
• SCRUM-2509 added fix for multiselect reset bug by @adamgibs in #959
• SCRUM-2509 made queryString lowercase to match optionLabel case by @adamgibs in #960
• SCRUM-2696 Create empty set if ingest set missing by @markquintontulloch in #958
• PRmerge/beta by @abecerra in #961
• SCRUM-2509 removed setDefaultColumnOrder from reset methods by @adamgibs in #964
• Added code to split out cleanup and history tracking by @oblodgett in #962
• Showing uierrors support added for new annotation pop up by @kthorat-prog in #963
• Added finished load to all file processing by @oblodgett in #965
• SCRUM-2711 Add DataProvider to BiologicalEntity by @markquintontulloch in #966
• Added error messages on restarted server by @oblodgett in #967
• Release/v0.17.0 rc3 by @markquintontulloch in #968
• added migration PR into SCRUM-2661 by @oblodgett in #969
• Added another option (this disables FK's which also speeds it up) PR into PR #969 by @oblodgett in #970
• PRmerge/beta by @markquintontulloch in #971
• Evidence code filter changed to multiselect dropdown by @kthorat-prog in #972
• SCRUM-2661 Clean up ontology audit tables by @markquintontulloch in #974
• Experimental conditions column has new filter field added- condition … by @kthorat-prog in #975
• Superscript display improved for name & symbol field for Genes Table by @kthorat-prog in #976
• superscript formatted for new annotation pop up human readable text by @kthorat-prog in https://github.com/alliance-genome...