diff --git a/.github/workflows/Documentation.yml b/.github/workflows/Documentation.yml new file mode 100644 index 0000000..a0b4f8d --- /dev/null +++ b/.github/workflows/Documentation.yml @@ -0,0 +1,23 @@ +name: Documentation +on: + push: + branches: + - main + - dev + tags: '*' + pull_request: + +jobs: + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v2 + - uses: julia-actions/setup-julia@latest + with: + version: '1.9' + - name: Install dependencies + run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()' + - name: Build and deploy + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token + run: julia --project=docs/ docs/make.jl \ No newline at end of file diff --git a/.gitignore b/.gitignore index 63a757f..35ada41 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,7 @@ +*.jl.*.cov +*.jl.cov +*.jl.mem /Manifest.toml -/src/algorithms/tryoptimize.jl \ No newline at end of file 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"1.2.13+0" + +[[deps.catch22_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "7cfb827b3f62e20de3ccebaabf468ea979d098d9" +uuid = "8a07c0c5-99ad-56cb-bc82-72eed1bb61ce" +version = "0.4.0+0" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+0" + +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+0" diff --git a/docs/Project.toml b/docs/Project.toml new file mode 100644 index 0000000..276e28f --- /dev/null +++ b/docs/Project.toml @@ -0,0 +1,11 @@ +[deps] +Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" +ModalDecisionLists = "dbece2fb-9d58-4710-9902-4ec759308ae8" +Sole = "7b3b3b3f-8b15-4a80-a798-b383498bc2cf" +SoleBase = "4475fa32-7023-44a0-aa70-4813b230e492" +SoleData = "123f1ae1-6307-4526-ab5b-aab3a92a2b8c" +SoleLogics = "b002da8f-3cb3-4d91-bbe3-2953433912b5" +SoleModels = "4249d9c7-3290-4ddd-961c-e1d3ec2467f8" + +[compat] +Documenter = "1" diff --git a/docs/make.jl b/docs/make.jl new file mode 100644 index 0000000..2cce589 --- /dev/null +++ b/docs/make.jl @@ -0,0 +1,28 @@ +using ModalDecisionLists +using Documenter + +DocMeta.setdocmeta!(ModalDecisionLists, :DocTestSetup, :(using ModalDecisionLists); recursive=true) + +makedocs(; + modules=[ModalDecisionLists, ModalDecisionLists.MLJInterface, ModalDecisionLists.LossFunctions], + authors="Giovanni Pagliarini, Edoardo Ponsanesi", + repo=Documenter.Remotes.GitHub("aclai-lab", "ModalDecisionLists.jl"), + sitename="ModalDecisionLists.jl", + format=Documenter.HTML(; + size_threshold = 4000000, + prettyurls=get(ENV, "CI", "false") == "true", + canonical="https://aclai-lab.github.io/ModalDecisionLists.jl", + assets=String[], + ), + pages=[ + "Home" => "index.md", + ], + warnonly = true, # TODO remove? +) + +deploydocs(; + repo = "github.com/aclai-lab/ModalDecisionLists.jl", + target = "build", + branch = "gh-pages", + versions = ["main" => "main", "stable" => "v^", "v#.#", "dev" => "dev"], +) diff --git a/docs/src/assets/logo.png b/docs/src/assets/logo.png new file mode 100644 index 0000000..829a2bd Binary files /dev/null and b/docs/src/assets/logo.png differ diff --git a/docs/src/index.md b/docs/src/index.md new file mode 100644 index 0000000..4eefbc1 --- /dev/null +++ b/docs/src/index.md @@ -0,0 +1,25 @@ +```@meta +CurrentModule = ModalDecisionLists +``` + +# ModalDecisionLists + +Welcome to the documentation for [ModalDecisionLists](https://github.com/aclai-lab/ModalDecisionLists.jl). + +```@index +``` + +```@autodocs +Modules = [ModalDecisionLists, ModalDecisionLists.MLJInterface, ModalDecisionLists.experimentals] +``` + + +# TODO continue this example + +```@docs +sequentialcovering +SearchMethod +AtomSearch +BeamSearch +RandSearch +``` diff --git a/src/algorithms/base-cn2.jl b/src/algorithms/base-cn2.jl index df62caf..9f24f4b 100644 --- a/src/algorithms/base-cn2.jl +++ b/src/algorithms/base-cn2.jl @@ -10,7 +10,7 @@ using StatsBase: countmap import SoleLogics: LogicalInstance, Formula, LeftmostLinearForm import SoleModels: Rule, AbstractModel, ConstantModel import SoleBase: CLabel -import SoleData: UnivariateSymbolValue +import SoleData: VariableValue import SoleData: features struct Selector @@ -28,7 +28,7 @@ end function selector2soleatom(sel::Selector)::Atom{ScalarCondition} - feature = UnivariateSymbolValue(varname(sel)) + feature = VariableValue(varname(sel)) tresh = treshold(sel) test_op = test_operator(sel) return Atom(ScalarCondition(feature, test_op, tresh)) diff --git a/src/searchmethods/beamsearch.jl b/src/searchmethods/beamsearch.jl index 7cf9703..6769331 100644 --- a/src/searchmethods/beamsearch.jl +++ b/src/searchmethods/beamsearch.jl @@ -77,7 +77,7 @@ Return the list of all possible antecedents containing a single condition from t """ function unaryconditions( ::AtomSearch, - a::AbstractAlphabet, + a::UnionAlphabet, X::AbstractLogiset )::Vector{Tuple{Atom,SatMask}} conditions = Tuple{Atom{ScalarCondition},SatMask}[] @@ -287,7 +287,7 @@ end ############################################################################################ function find_singlerule( - candidates::AbstractVector{<:Tuple{Formula, SatMask}}, + candidates::AbstractVector{<:Tuple{Formula,SatMask}}, X::AbstractLogiset, y::AbstractVector{<:Integer}, w::AbstractVector, @@ -297,7 +297,6 @@ function find_singlerule( nlabels, # optional positional discretizedomain::Bool=false, - truerfirst::Bool=false, max_rule_length::Union{Nothing,Integer}=nothing, alphabet::Union{Nothing,AbstractAlphabet}=nothing, max_infogain_ratio::Union{Nothing,Real}=nothing diff --git a/test/benchmark.jl b/test/benchmark.jl index 5504c27..e26f59a 100644 --- a/test/benchmark.jl +++ b/test/benchmark.jl @@ -2,7 +2,7 @@ using Test using Printf using SoleBase: CLabel using DataFrames -using SoleModels: ClassificationRule, apply, DecisionList, orange_decision_list +using SoleModels: ClassificationRule, apply, DecisionList, parse_orange_decision_list using SoleData using MLJ using StatsBase diff --git a/test/cn2-benchmark.jl b/test/cn2-benchmark.jl index 0f653b4..88f07ad 100644 --- a/test/cn2-benchmark.jl +++ b/test/cn2-benchmark.jl @@ -1,7 +1,7 @@ using Test using SoleBase: CLabel using DataFrames -using SoleModels: ClassificationRule, apply, DecisionList, orange_decision_list +using SoleModels: ClassificationRule, apply, DecisionList, parse_orange_decision_list using SoleData using MLJ using StatsBase diff --git a/test/cn2-correctness.jl b/test/cn2-correctness.jl index 197c2c9..e64418a 100644 --- a/test/cn2-correctness.jl +++ b/test/cn2-correctness.jl @@ -1,7 +1,7 @@ using Test using SoleBase: CLabel using DataFrames -using SoleModels: ClassificationRule, apply, DecisionList, orange_decision_list +using SoleModels: ClassificationRule, apply, DecisionList, parse_orange_decision_list using SoleData using MLJ using StatsBase @@ -101,7 +101,7 @@ orange_decisionlist = """ [0, 1, 0] IF sepal length<=5.9 THEN iris=Iris-versicolor -0.0 [50, 50, 50] IF TRUE THEN iris=Iris-virginica -1.584962500721156 """ -imported_decisionlist = SoleModels.orange_decision_list(orange_decisionlist, true) +imported_decisionlist = SoleModels.parse_orange_decision_list(orange_decisionlist, true) @test length(listrules(sole_decisionlist)) == length(listrules(base_decisionlist)) @test length(listrules(sole_decisionlist)) == length(listrules(imported_decisionlist)) diff --git a/test/orange-decisionlists.jl b/test/orange-decisionlists.jl index 2715a4c..2f42c9b 100644 --- a/test/orange-decisionlists.jl +++ b/test/orange-decisionlists.jl @@ -1,6 +1,6 @@ using SoleData using ModalDecisionLists -using SoleModels: ClassificationRule, apply, DecisionList, bestguess, orange_decision_list +using SoleModels: ClassificationRule, apply, DecisionList, bestguess, parse_orange_decision_list using ModalDecisionLists: preprocess_inputdata using ModalDecisionLists.LossFunctions: laplace_accuracy using CategoricalArrays: CategoricalValue, CategoricalArray @@ -808,7 +808,7 @@ abalone1000_dl_orange = """ [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0] IF Length>=0.645 THEN Rings=18 -0.0 [0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] IF Sex==F THEN Rings=6 -0.0 [1, 1, 7, 18, 31, 60, 97, 84, 109, 117, 91, 79, 71, 49, 52, 29, 28, 18, 17, 16, 9, 6, 5, 1, 1] IF TRUE THEN Rings=10 -3.984037499126841 -""" |> orange_decision_list +""" |> parse_orange_decision_list abalone1000_no_categorical_dl_orange = """ [0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] IF Viscera_weight<=0.0105 AND Shell_weight>=0.0155 AND Diameter>=0.175 THEN Rings=5 -0.0 @@ -1523,7 +1523,7 @@ abalone1000_no_categorical_dl_orange = """ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0] IF Length<=0.075 THEN Rings=1 -0.0 [1, 1, 7, 18, 31, 60, 97, 84, 109, 117, 91, 79, 71, 49, 52, 29, 28, 18, 17, 16, 9, 6, 5, 1, 1] IF TRUE THEN Rings=10 -3.984037499126841 -""" |> orange_decision_list +""" |> parse_orange_decision_list bs = BeamSearch( beam_width = 5, discretizedomain=true) println(bs)