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zeco-simple.obo
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format-version: 1.2
data-version: zeco/releases/2022-02-14/zeco-simple.owl
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_go_ontology ""
subsetdef: http://purl.obolibrary.org/obo/valid_for_gocam ""
subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
subsetdef: ZECO:0000267 ""
default-namespace: zebrafish_experimental_conditions_ontology
ontology: zeco/zeco-simple
property_value: http://purl.org/dc/elements/1.1/description "Ontology of Zebrafish Experimental Conditions" xsd:string
property_value: http://purl.org/dc/elements/1.1/title "Zebrafish Experimental Conditions Ontology" xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/
property_value: owl:versionInfo "2022-02-14" xsd:string
[Term]
id: ZECO:0000100
name: conditions
def: "The state in which an organism exists. " []
[Term]
id: ZECO:0000101
name: control conditions
def: "Condition which serves as a standard against which experimental conditions can be compared." []
subset: ZECO:0000267
is_a: ZECO:0000100 ! conditions
[Term]
id: ZECO:0000102
name: generic control
def: "Control condition in which the conditions of the organism in the control experiment are not standard but are being used as the condition against which the experimental condition is compared." []
synonym: "innocuous condition" EXACT []
is_a: ZECO:0000101 ! control conditions
[Term]
id: ZECO:0000103
name: standard conditions
def: "Experimental condition that is the standard environment for zebrafish husbandry, as described in ‘The Zebrafish Book’. In general the standard environment utilizes contaminant free tank water, heated to 28.5 degrees C, with the fish fed a normal contaminant free diet, with standard osmolarity, pH, and normal light cycle of 14hr light/10hr dark." []
subset: ZECO:0000267
is_a: ZECO:0000100 ! conditions
[Term]
id: ZECO:0000104
name: experimental conditions
def: "Condition in which variables of the experiment are manipulated to determine the variables effect by comparing to a control condition." []
subset: ZECO:0000267
is_a: ZECO:0000100 ! conditions
[Term]
id: ZECO:0000105
name: biological treatment
def: "Experimental condition in which the organism is treated with a microorganism." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000106
name: bacterial treatment
def: "Biological treatment in which fish have been infected with bacteria. This infection can be done by addition of bacteria in the water or by injection of bacteria, (for example in the brain ventricle, in the caudal vein, in the yolk sac), or ingestion, or other means." []
is_a: ZECO:0000105 ! biological treatment
[Term]
id: ZECO:0000107
name: fungal treatment
def: "Biological treatment in which fish have been infected with a fungus." []
is_a: ZECO:0000105 ! biological treatment
[Term]
id: ZECO:0000108
name: germ free
def: "Biological treatment in which fish were raised in the absence of bacteria." []
is_a: ZECO:0000105 ! biological treatment
[Term]
id: ZECO:0000109
name: protozoan treatment
def: "Biological treatment in which fish have been infected with protozoa." []
is_a: ZECO:0000105 ! biological treatment
[Term]
id: ZECO:0000110
name: viral treatment
def: "Biological treatment in which fish have been infected with a virus." []
is_a: ZECO:0000105 ! biological treatment
[Term]
id: ZECO:0000111
name: chemical treatment
def: "Experimental condition in which the fish is treated with a chemical substance. This treatment could be administered by adding the chemical substance to the tank water, injections, or by consumption." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000112
name: diet
def: "Experimental condition where the food of the zebrafish is manipulated in some way." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000113
name: food availability
def: "Experimental condition in which the availability of food is manipulated." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000114
name: fasting
def: "Limited food availability condition in which there is no food provided." []
is_a: ZECO:0000115 ! limited food availability
[Term]
id: ZECO:0000115
name: limited food availability
def: "Food availability condition in which food is provided in limited supply." []
is_a: ZECO:0000113 ! food availability
[Term]
id: ZECO:0000116
name: unlimited food availability
def: "Food availability condition in which food is available in unlimited supply." []
is_a: ZECO:0000247 ! increased food availability
[Term]
id: ZECO:0000117
name: food content
def: "Diet condition in which the contents of the food is manipulated." []
is_a: ZECO:0000112 ! diet
[Term]
id: ZECO:0000118
name: cholesterol content
def: "Food content condition in which the amount of cholesterol in the diet is manipulated." []
is_a: ZECO:0000117 ! food content
[Term]
id: ZECO:0000119
name: high cholesterol
def: "Cholesterol content condition in which the amount of cholesterol in the diet is elevated." []
is_a: ZECO:0000118 ! cholesterol content
[Term]
id: ZECO:0000120
name: low cholesterol
def: "Cholesterol content condition in which the amount of cholesterol in the diet is reduced." []
is_a: ZECO:0000118 ! cholesterol content
[Term]
id: ZECO:0000121
name: fat content
def: "Food content condition in which the amount of fat in the diet is manipulated." []
is_a: ZECO:0000117 ! food content
[Term]
id: ZECO:0000122
name: high fat
def: "Fat content condition in which the amount of fat in the diet is elevated." []
is_a: ZECO:0000121 ! fat content
is_a: ZECO:0000251 ! nutrient increased
[Term]
id: ZECO:0000123
name: high saturated fat
def: "High fat condition in which the amount of saturated fat in the diet is elevated." []
is_a: ZECO:0000122 ! high fat
[Term]
id: ZECO:0000124
name: high monounsaturated fat
def: "High fat condition in which the amount of monounsaturated fat in the diet is elevated." []
is_a: ZECO:0000122 ! high fat
[Term]
id: ZECO:0000125
name: low fat
def: "Fat content condition in which the amount of fat in the diet is reduced." []
is_a: ZECO:0000121 ! fat content
is_a: ZECO:0000250 ! nutrient decreased
[Term]
id: ZECO:0000126
name: low trans fat
def: "Low fat condition in which the amount of trans fat in the diet is reduced." []
is_a: ZECO:0000125 ! low fat
[Term]
id: ZECO:0000127
name: low polyunsaturated fat
def: "Low fat condition in which the amount of polyunsaturated fat in the diet is reduced." []
is_a: ZECO:0000125 ! low fat
[Term]
id: ZECO:0000128
name: protein content
def: "Food content condition in which the amount of protein in the diet is manipulated." []
is_a: ZECO:0000117 ! food content
[Term]
id: ZECO:0000129
name: high protein
def: "Protein content condition in which the protein in the diet is elevated." []
is_a: ZECO:0000128 ! protein content
is_a: ZECO:0000251 ! nutrient increased
[Term]
id: ZECO:0000130
name: low protein
def: "Protein content condition in which the protein in the diet is reduced." []
is_a: ZECO:0000128 ! protein content
is_a: ZECO:0000250 ! nutrient decreased
[Term]
id: ZECO:0000131
name: stress
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000132
name: high sugar
def: "High carbohydrate conditions in which the amount of sugar in the diet is elevated." []
is_a: ZECO:0000241 ! high carbohydrate
[Term]
id: ZECO:0000133
name: high fructose
def: "High sugar condition in which the amount of fructose in the diet is elevated." []
is_a: ZECO:0000132 ! high sugar
[Term]
id: ZECO:0000134
name: high glucose
def: "High sugar condition in which the amount of glucose in the diet is elevated." []
is_a: ZECO:0000132 ! high sugar
[Term]
id: ZECO:0000135
name: high sucrose
def: "High sugar condition in which the amount of sucrose in the diet is elevated." []
is_a: ZECO:0000132 ! high sugar
[Term]
id: ZECO:0000136
name: low sugar
def: "High carbohydrate conditions in which the amount of sugar in the diet is reduced." []
is_a: ZECO:0000242 ! low carbohydrate
[Term]
id: ZECO:0000137
name: low sucrose
def: "Low sugar condition in which the amount of sucrose in the diet is reduced." []
is_a: ZECO:0000136 ! low sugar
[Term]
id: ZECO:0000138
name: low fructose
def: "Low sugar condition in which the amount of fructose in the diet is reduced." []
is_a: ZECO:0000136 ! low sugar
[Term]
id: ZECO:0000139
name: low glucose
def: "Low sugar condition in which the amount of glucose in the diet is reduced." []
is_a: ZECO:0000136 ! low sugar
[Term]
id: ZECO:0000140
name: housing conditions
def: "Experimental condition that manipulates the enclosure of the fish." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000141
name: open roofed
def: "Housing condition in which the roof of the enclosure if open." []
is_a: ZECO:0000140 ! housing conditions
[Term]
id: ZECO:0000142
name: overcrowding
def: "Housing condition in which the enclosure of the fish is overcrowded, containing an excess of fish that reduces the available space of the enclosure." []
synonym: "high density" EXACT []
is_a: ZECO:0000140 ! housing conditions
[Term]
id: ZECO:0000143
name: in vitro culture
def: "Experimental condition in which components of the fish have been removed and are maintained separately." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000144
name: organ culture
def: "In vitro culture condition in which an organ is dissected/isolated/collected from the fish and placed in culture. The analysis of the experiment is done on this organ in culture." []
is_a: ZECO:0000143 ! in vitro culture
[Term]
id: ZECO:0000145
name: primary cell culture
def: "In vitro culture condition in which an embryo or adult fish is dissociated to a single cell suspension. The analysis is made on this cell culture." []
is_a: ZECO:0000143 ! in vitro culture
[Term]
id: ZECO:0000146
name: lighting conditions
def: "Experimental condition in which the intensity, wavelength, and/or duration of illumination is (are) different from the one in controlled conditions." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000147
name: light duration
is_a: ZECO:0000146 ! lighting conditions
[Term]
id: ZECO:0000148
name: altered light dark cycle
is_a: ZECO:0000147 ! light duration
[Term]
id: ZECO:0000149
name: constant dark
is_a: ZECO:0000147 ! light duration
[Term]
id: ZECO:0000150
name: constant light
is_a: ZECO:0000147 ! light duration
[Term]
id: ZECO:0000151
name: light intensity
is_a: ZECO:0000146 ! lighting conditions
[Term]
id: ZECO:0000152
name: high light intensity
is_a: ZECO:0000151 ! light intensity
[Term]
id: ZECO:0000153
name: low light intensity
is_a: ZECO:0000151 ! light intensity
[Term]
id: ZECO:0000154
name: gravity
def: "Experimental condition in which gravity forces are manipulated. For zebrafish, this can be in the form of centrifugal forces or trips to outerspace." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000155
name: mechanical stress
def: "Experimental condition in which an external mechanical force is applied to the fish or part of the fish." []
is_a: ZECO:0000131 ! stress
[Term]
id: ZECO:0000156
name: vibration
is_a: ZECO:0000155 ! mechanical stress
[Term]
id: ZECO:0000157
name: water flow
is_a: ZECO:0000155 ! mechanical stress
[Term]
id: ZECO:0000158
name: circular flow
is_a: ZECO:0000157 ! water flow
[Term]
id: ZECO:0000159
name: through flow
is_a: ZECO:0000157 ! water flow
[Term]
id: ZECO:0000160
name: temperature exposure
def: "Experimental condition in which the zebrafish is exposed to an increased or decreased temperature." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000161
name: stable temperature exposure
def: "Temperature exposure condition in which fish are raised in temperature different (lower or higher) than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." []
is_a: ZECO:0000160 ! temperature exposure
[Term]
id: ZECO:0000162
name: cold exposure
def: "Temperature exposure condition in which fish are raised in temperature that is lower than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." []
is_a: ZECO:0000161 ! stable temperature exposure
[Term]
id: ZECO:0000163
name: heat exposure
def: "Temperature exposure condition in which fish are raised in temperature that is higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." []
is_a: ZECO:0000161 ! stable temperature exposure
[Term]
id: ZECO:0000164
name: temperature shock
def: "Temperature exposure condition in which fish are subjected for a short period of time to temperature that is lower or higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." []
is_a: ZECO:0000160 ! temperature exposure
[Term]
id: ZECO:0000165
name: cold shock
def: "Temperature shock condition in which fish are subjected for a short period of time to temperature lower than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." []
is_a: ZECO:0000164 ! temperature shock
[Term]
id: ZECO:0000166
name: heat shock
def: "Temperature shock condition in which fish are subjected for a short period of time to temperature higher than the controlled temperature. The standard controlled temperature (according to the zebrafish book) is 28.5 degrees C." []
is_a: ZECO:0000164 ! temperature shock
[Term]
id: ZECO:0000168
name: ablation
def: "Targeted destruction of an anatomical structure." []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000169
name: chemical ablation
def: "Experimental condition which uses a chemical to ablate an anatomical structure or cell." []
is_a: ZECO:0000168 ! ablation
[Term]
id: ZECO:0000170
name: light ablation
def: "Experimental condition which uses focused light to ablate an anatomical structure or cell." []
is_a: ZECO:0000168 ! ablation
is_a: ZECO:0000245 ! light damage
[Term]
id: ZECO:0000171
name: resection
def: "Surgical manipulation in which a particular organ, appendage, or part of an organism is removed." []
is_a: ZECO:0000176 ! surgical manipulation
[Term]
id: ZECO:0000172
name: amputation
def: "Resection condtion in which all or part of an extremity such as the fin or tail are removed." []
is_a: ZECO:0000171 ! resection
[Term]
id: ZECO:0000173
name: vaccine treatment
def: "Biological treatment in which the organism is treated with a substance to stimulate the production of antibodies and provide immunity against one or several diseases." []
is_a: ZECO:0000105 ! biological treatment
[Term]
id: ZECO:0000174
name: laceration
def: "Experimental condition in which there is a deep cut or tear of the flesh." []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000176
name: surgical manipulation
def: "Experimental condition that involves manual or instrumental techniques to alter anatomical structures." []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000177
name: xenotransplantation
def: "Experimental condition in which living cells or tissues from one species are transplanted into another." []
is_a: ZECO:0000105 ! biological treatment
[Term]
id: ZECO:0000178
name: perforation
def: "Experimental condition in which a hole or break in the membranes of an organ or structure of the body is created." []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000179
name: abrasion
def: "Experimental condition that results in superficial damage of tissue such that it is scraped or worn away." []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000180
name: contusion
def: "Experimental condition that results in hematoma of tissue in which capillaries and sometimes venules are damaged by trauma, allowing blood to seep, hemorrhage, or extravasate into the surrounding interstitial tissues. (https://en.wikipedia.org/wiki/Bruise)" []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000181
name: transection
def: "Cutting transversly of an organ or tissue. Type of cutting often used to divide the spinal cord to investigate neural regeneration in zebrafish." []
is_a: ZECO:0000176 ! surgical manipulation
[Term]
id: ZECO:0000182
name: water quality
def: "Experimental condition in which a chemical or physical characteristic of water is altered." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000183
name: gas composition
comment: Water quality condition that alters the concentration of atmospheric gases in water.
is_a: ZECO:0000182 ! water quality
[Term]
id: ZECO:0000184
name: carbon dioxide content
def: "A gas composition condition that alters the concentraion of carbion dioxide." []
is_a: ZECO:0000183 ! gas composition
[Term]
id: ZECO:0000185
name: hypercapnia
is_a: ZECO:0000184 ! carbon dioxide content
[Term]
id: ZECO:0000186
name: hypocapnia
is_a: ZECO:0000184 ! carbon dioxide content
[Term]
id: ZECO:0000187
name: oxygen content
def: "A gas composition condition that alters the concentraion of oxygen." []
is_a: ZECO:0000183 ! gas composition
[Term]
id: ZECO:0000188
name: hyperoxia
def: "An oxygen content with high concentration of oxygen." []
is_a: ZECO:0000187 ! oxygen content
[Term]
id: ZECO:0000189
name: hypoxia
def: "An oxygen content with low concentration of oxygen." []
is_a: ZECO:0000187 ! oxygen content
[Term]
id: ZECO:0000190
name: ion composition
is_a: ZECO:0000182 ! water quality
[Term]
id: ZECO:0000191
name: modified calcium composition
is_a: ZECO:0000190 ! ion composition
[Term]
id: ZECO:0000192
name: high calcium
is_a: ZECO:0000191 ! modified calcium composition
[Term]
id: ZECO:0000193
name: low calcium
is_a: ZECO:0000191 ! modified calcium composition
[Term]
id: ZECO:0000194
name: modified potassium composition
is_a: ZECO:0000190 ! ion composition
[Term]
id: ZECO:0000195
name: high potassium
is_a: ZECO:0000194 ! modified potassium composition
[Term]
id: ZECO:0000196
name: low potassium
is_a: ZECO:0000194 ! modified potassium composition
[Term]
id: ZECO:0000197
name: modified sodium composition
is_a: ZECO:0000190 ! ion composition
[Term]
id: ZECO:0000198
name: high sodium
is_a: ZECO:0000197 ! modified sodium composition
[Term]
id: ZECO:0000199
name: low sodium
is_a: ZECO:0000197 ! modified sodium composition
[Term]
id: ZECO:0000200
name: pH
is_a: ZECO:0000190 ! ion composition
[Term]
id: ZECO:0000201
name: acidic
def: "Experimental condition in which the pH of the water is lower than the pH of the controlled conditions." []
is_a: ZECO:0000200 ! pH
[Term]
id: ZECO:0000202
name: basic
def: "Experimental condition in which the pH of the water is higher than the pH of the controlled conditions." []
is_a: ZECO:0000200 ! pH
[Term]
id: ZECO:0000203
name: water salinity
is_a: ZECO:0000182 ! water quality
[Term]
id: ZECO:0000204
name: hypertonic
def: "Experimental condition in which the salt concentration is higher than the one in controlled conditions." []
is_a: ZECO:0000203 ! water salinity
[Term]
id: ZECO:0000205
name: hypotonic
def: "Experimental condition in which the salt concentration is lower than the one in controlled conditions." []
is_a: ZECO:0000203 ! water salinity
[Term]
id: ZECO:0000206
name: isotonic
is_a: ZECO:0000203 ! water salinity
[Term]
id: ZECO:0000207
name: stable
is_a: ZECO:0000203 ! water salinity
[Term]
id: ZECO:0000208
name: radiation
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000209
name: electromagnetic radiation
is_a: ZECO:0000208 ! radiation
[Term]
id: ZECO:0000210
name: radio waves
is_a: ZECO:0000209 ! electromagnetic radiation
[Term]
id: ZECO:0000211
name: microwaves
is_a: ZECO:0000209 ! electromagnetic radiation
[Term]
id: ZECO:0000212
name: infared
is_a: ZECO:0000209 ! electromagnetic radiation
[Term]
id: ZECO:0000213
name: visible light
def: "Electromagnetic radiation with a wavelength from 400 nm to 700 nm. Visible light referes to the light which is visible to the human eye and is responsible fo the sense of sight." [https://en.wikipedia.org/wiki/Light]
is_a: ZECO:0000209 ! electromagnetic radiation
[Term]
id: ZECO:0000214
name: ultraviolet light
def: "Electromagnetic radiation with a wavelength from 10 nm to 400nm. Long-wavelength ultraviolet radiation can cause chemical reactions and causes many substances to glow or fluoresce." [https://en.wikipedia.org/wiki/Ultraviolet]
synonym: "UV" EXACT []
synonym: "UV light" EXACT []
is_a: ZECO:0000209 ! electromagnetic radiation
[Term]
id: ZECO:0000215
name: x-ray
is_a: ZECO:0000209 ! electromagnetic radiation
[Term]
id: ZECO:0000216
name: gamma ray
is_a: ZECO:0000209 ! electromagnetic radiation
[Term]
id: ZECO:0000217
name: particle radiation
is_a: ZECO:0000208 ! radiation
[Term]
id: ZECO:0000218
name: proton
is_a: ZECO:0000217 ! particle radiation
[Term]
id: ZECO:0000219
name: neutron
is_a: ZECO:0000217 ! particle radiation
[Term]
id: ZECO:0000220
name: acoustic radiation
is_a: ZECO:0000208 ! radiation
[Term]
id: ZECO:0000221
name: alpha particle
is_a: ZECO:0000217 ! particle radiation
[Term]
id: ZECO:0000222
name: electromagnetic field
def: "Experimental condition in which the fish is exposed to a physical field that is produced by electrically charged objects." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000223
name: electric field
def: "Experimental condition where the fish is exposed to materials that produce an electric field." []
is_a: ZECO:0000222 ! electromagnetic field
[Term]
id: ZECO:0000224
name: magnetic field
def: "Experimental condition where the fish is exposed to magnetic materials." []
is_a: ZECO:0000222 ! electromagnetic field
[Term]
id: ZECO:0000225
name: high polysunsaturated fat
def: "High fat condition in which the amount of polyunsaturated fat in the diet is elevated." []
is_a: ZECO:0000122 ! high fat
[Term]
id: ZECO:0000226
name: high trans fat
def: "High fat condition in which the amount of trans fat in the diet is elevated." []
is_a: ZECO:0000122 ! high fat
[Term]
id: ZECO:0000227
name: low saturated fat
def: "Low fat condition in which the amount of saturated fat in the diet is reduced." []
is_a: ZECO:0000125 ! low fat
[Term]
id: ZECO:0000228
name: low monounsaturated fat
def: "Low fat condition in which the amount of monounsaturated fat in the diet is reduced." []
is_a: ZECO:0000125 ! low fat
[Term]
id: ZECO:0000229
name: physical alteration
def: "Experimental condition in which an anatomical structure, cell, or organ has sustained targeted physical change, usually through the use of an instrument." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000230
name: bacterial treatment by injection
def: "Bacterial treatment where the bacteria are injected into the fish." []
is_a: ZECO:0000106 ! bacterial treatment
[Term]
id: ZECO:0000231
name: bacterial treatment by exposure to environment
def: "Bacterial treatment where the bacteria are introduced via the environment. For zebrafish this is the tank water." []
is_a: ZECO:0000106 ! bacterial treatment
[Term]
id: ZECO:0000232
name: fungal treatment by injection
def: "Fungal treatment where the fungus is injected into the fish." []
is_a: ZECO:0000107 ! fungal treatment
[Term]
id: ZECO:0000233
name: fungal treatment by exposure to environment
def: "Fungal treatment where the fungus is introduced via the environment. For zebrafish this is the tank water." []
is_a: ZECO:0000107 ! fungal treatment
[Term]
id: ZECO:0000234
name: viral treatment by exposure to environment
def: "Viral treatment where the virus is introduced via the environment. For zebrafish this is the tank water." []
is_a: ZECO:0000110 ! viral treatment
[Term]
id: ZECO:0000235
name: viral treatment by injection
def: "Viral treatment where the virus is injected into the fish." []
is_a: ZECO:0000110 ! viral treatment
[Term]
id: ZECO:0000236
name: cancer xenotransplantation
def: "Xenotransplantation condition in which cancer cells are injected or grafted into the zebrafish." []
is_a: ZECO:0000177 ! xenotransplantation
[Term]
id: ZECO:0000237
name: chemical treatment by injection
def: "Chemical treatment in which the chemical is injected into the zebrafish." []
is_a: ZECO:0000111 ! chemical treatment
[Term]
id: ZECO:0000238
name: chemical treatment by environment
def: "Chemical treatment condition in which the chemical is introduced through the environment. For zebrafish this is the tank water." []
is_a: ZECO:0000111 ! chemical treatment
[Term]
id: ZECO:0000239
name: chemical treatment by diet
def: "Chemical treatment condition in which the chemical is introduced through the diet." []
is_a: ZECO:0000111 ! chemical treatment
is_a: ZECO:0000112 ! diet
[Term]
id: ZECO:0000240
name: carbohydrate content
def: "Food content condition in which the amount of carbohydrate in the diet is manipulated." []
is_a: ZECO:0000117 ! food content
[Term]
id: ZECO:0000241
name: high carbohydrate
def: "Food content condtion in which the amount of carbohydrate in the diet is elevated." []
is_a: ZECO:0000240 ! carbohydrate content
is_a: ZECO:0000251 ! nutrient increased
[Term]
id: ZECO:0000242
name: low carbohydrate
def: "Food content condtion in which the amount of carbohydrate in the diet is reduced." []
is_a: ZECO:0000240 ! carbohydrate content
is_a: ZECO:0000250 ! nutrient decreased
[Term]
id: ZECO:0000243
name: stress by handling
is_a: ZECO:0000131 ! stress
[Term]
id: ZECO:0000244
name: ultrasound
def: "Mechanical stress condition where the organism is subjected to vibrations having an ultrasonic frequency." []
is_a: ZECO:0000156 ! vibration
[Term]
id: ZECO:0000245
name: light damage
def: "Physical alteration which uses light to damage the anatomical structure, cell, or organ." []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000246
name: undercrowding
def: "Housing condition in which the enclosure of the fish is undercrowded,containing a low amount of fish that increases the available space of the enclosure." []
synonym: "low density" EXACT []
is_a: ZECO:0000140 ! housing conditions
[Term]
id: ZECO:0000247
name: increased food availability
def: "Food availability condition in which food is provided in increased supply." []
synonym: "overfeeding" EXACT []
is_a: ZECO:0000113 ! food availability
[Term]
id: ZECO:0000248
name: cold damage
def: "Physical alteration which uses cold to damage an anatomical structure, cell, or organ" []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000249
name: cryoablation
def: "Experimental condition which uses a cold instrument to ablate an anatomical structure or cell." []
is_a: ZECO:0000168 ! ablation
is_a: ZECO:0000248 ! cold damage
[Term]
id: ZECO:0000250
name: nutrient decreased
def: "Food content condition in which levels of a nutrient are decreased relative to standard diet." []
is_a: ZECO:0000117 ! food content
[Term]
id: ZECO:0000251
name: nutrient increased
def: "Food content condition in which levels of a nutrient are increased relative to standard diet." []
is_a: ZECO:0000117 ! food content
[Term]
id: ZECO:0000252
name: feeding regime
def: "Experimental condition that manipulates the frequency or way an organism is fed." []
subset: ZECO:0000267
is_a: ZECO:0000104 ! experimental conditions
[Term]
id: ZECO:0000253
name: gavage
def: "Feeding regime in which food, drugs, or other substances are administered by force, typically through a tube leading down the throat to the stomach." []
is_a: ZECO:0000252 ! feeding regime
[Term]
id: ZECO:0000254
name: bacterial treatment by gavage
def: "Bacterial treatment condition where bacteria are introduced to the organism by gavage." []
is_a: ZECO:0000106 ! bacterial treatment
is_a: ZECO:0000253 ! gavage
[Term]
id: ZECO:0000255
name: chemical treatment by gavage
def: "Chemical treatment condition where the chemical is introduced to the organism by gavage." []
is_a: ZECO:0000111 ! chemical treatment
is_a: ZECO:0000253 ! gavage
[Term]
id: ZECO:0000256
name: bacterial treatment by diet
def: "Bacterial treatment where bacteria are introduced via the diet." []
is_a: ZECO:0000106 ! bacterial treatment
[Term]
id: ZECO:0000259
name: cauterization
def: "Condition that uses a cold or hot insturment, electrical current, or chemical to burn or dissolve an anatomical structure to remove or close it off." []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000260
name: thermal cauterization
def: "Cauterization of a tissue using a heated instrument." []
is_a: ZECO:0000259 ! cauterization
[Term]
id: ZECO:0000261
name: compression injury
def: "An injury that occurs because of pressure from a heavy object onto a body part. A compression injury may also arise from squeezing of a body part between two objects. https://www.medicinenet.com/crush_injury/definition.htm" []
synonym: "crush injury" EXACT []
is_a: ZECO:0000229 ! physical alteration
[Term]
id: ZECO:0000262
name: probiotic content
def: "Food content condition in which the amount of probiotics in the diet is manipulated" []
is_a: ZECO:0000117 ! food content
[Term]
id: ZECO:0000263
name: microgravity
def: "Experimental condition in which gravity forces are smaller than in control conditions. An example of a microgravity condition would be trips to outerspace." []
is_a: ZECO:0000154 ! gravity
[Term]
id: ZECO:0000264
name: increased gravity
def: "Experimental condition in which gravity forces are greater than in control conditions. An example of an increased gravity condition would be the application of centrifugal forces." []
is_a: ZECO:0000154 ! gravity
[Typedef]
id: BFO:0000050
name: part of
def: "a core relation that holds between a part and its whole" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
property_value: IAO:0000111 "is part of" xsd:string
property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string
property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string
property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string
property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string
property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string
property_value: IAO:0000118 "part_of" xsd:string
property_value: RO:0001900 RO:0001901
property_value: RO:0040042 BFO:0000002
property_value: RO:0040042 BFO:0000003
property_value: RO:0040042 BFO:0000004
property_value: RO:0040042 BFO:0000017
property_value: RO:0040042 BFO:0000019
property_value: RO:0040042 BFO:0000020
property_value: RO:0040042 BFO:0000031
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections