diff --git a/_data/citations.yaml b/_data/citations.yaml index 544d8ce..4d6fc7c 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,5 +1,108 @@ # GENERATED AUTOMATICALLY, DO NOT EDIT +- id: 10.1101/2024.03.13.584858 + title: Toward generalizable phenotype prediction from single-cell morphology representations + authors: + - Jenna Tomkinson + - Roshan Kern + - Cameron Mattson + - Gregory P. Way + publisher: Cold Spring Harbor Laboratory + date: '2024-03-13' + link: https://doi.org/gtrgrh + image: https://github.com/WayScience/phenotypic_profiling/blob/main/7.figures/figures/figure1_panelB.png?raw=true + tags: + - single-cell + - microscopy + - phenotype + extra-links: + - type: source + link: https://github.com/WayScience/phenotypic_profiling/ + text: Analysis + - type: data + link: https://github.com/WayScience/mitocheck_data + text: Data + - type: software + link: https://github.com/WayScience/IDR_Stream + text: IDR_stream Software +- id: 10.1038/s41467-023-44045-w + title: High-dimensional phenotyping to define the genetic basis of cellular morphology + authors: + - Matthew Tegtmeyer + - Jatin Arora + - Samira Asgari + - Beth A. Cimini + - Ajay Nadig + - Emily Peirent + - Dhara Liyanage + - Gregory P. Way + - Erin Weisbart + - Aparna Nathan + - Tiffany Amariuta + - Kevin Eggan + - Marzieh Haghighi + - Steven A. McCarroll + - "Luke O\u2019Connor" + - Anne E. Carpenter + - Shantanu Singh + - Ralda Nehme + - Soumya Raychaudhuri + publisher: Nature Communications + date: '2024-01-06' + link: https://doi.org/gtct77 + image: https://www.biorxiv.org/content/biorxiv/early/2023/01/09/2023.01.09.522731/F1.large.jpg + tags: + - cell painting + - data integration + - cell morphology +- id: 10.1101/2024.04.01.587631 + title: A versatile information retrieval framework for evaluating profile strength + and similarity + authors: + - Alexandr A. Kalinin + - John Arevalo + - Loan Vulliard + - Erik Serrano + - Hillary Tsang + - Michael Bornholdt + - Bartek Rajwa + - Anne E. Carpenter + - Gregory P. Way + - Shantanu Singh + publisher: Cold Spring Harbor Laboratory + date: '2024-04-02' + link: https://doi.org/gtrgrj + image: https://www.biorxiv.org/content/biorxiv/early/2024/04/02/2024.04.01.587631/F1.large.jpg + tags: + - drug screening metric + - software + - profiling + extra-links: + - type: source + link: https://github.com/cytomining/copairs + text: Software +- &id001 + id: 10.7554/eLife.91362 + title: High-content microscopy reveals a morphological signature of bortezomib resistance + authors: + - Megan E Kelley + - Adi Y Berman + - David R Stirling + - Beth A Cimini + - Yu Han + - Shantanu Singh + - Anne E Carpenter + - Tarun M Kapoor + - Gregory P Way + publisher: eLife + date: '2023-09-27' + link: https://doi.org/gtcgdd + image: https://raw.githubusercontent.com/broadinstitute/profiling-resistance-mechanisms/master/3.resistance-signature/figures/bortezomib_roc_curve.png + repo: https://github.com/broadinstitute/profiling-resistance-mechanisms + tags: + - cancer resistance + - cell painting + - open science - id: 10.1016/j.slasd.2023.08.009 title: Evolution and impact of high content imaging authors: @@ -84,27 +187,7 @@ tags: - software - cell morphology -- id: 10.7554/eLife.91362 - title: High-content microscopy reveals a morphological signature of bortezomib resistance - authors: - - Megan E Kelley - - Adi Y Berman - - David R Stirling - - Beth A Cimini - - Yu Han - - Shantanu Singh - - Anne E Carpenter - - Tarun M Kapoor - - Gregory P Way - publisher: eLife - date: '2023-09-27' - link: https://doi.org/gtcgdd - image: https://raw.githubusercontent.com/broadinstitute/profiling-resistance-mechanisms/master/3.resistance-signature/figures/bortezomib_roc_curve.png - repo: https://github.com/broadinstitute/profiling-resistance-mechanisms - tags: - - cancer resistance - - cell painting - - open science +- *id001 - id: doi:10.1016/j.xgen.2023.100340 title: 'OpenPBTA: The Open Pediatric Brain Tumor Atlas' authors: @@ -183,34 +266,6 @@ - pediatric cancer - brain tumor - open science -- id: 10.1101/2023.01.09.522731 - title: High-dimensional phenotyping to define the genetic basis of cellular morphology - authors: - - Matthew Tegtmeyer - - Jatin Arora - - Samira Asgari - - Beth A. Cimini - - Emily Peirent - - Dhara Liyanage - - Gregory Way - - Erin Weisbart - - Aparna Nathan - - Tiffany Amariuta - - Kevin Eggan - - Marzieh Haghighi - - Steven A. McCarroll - - Anne E. Carpenter - - Shantanu Singh - - Ralda Nehme - - Soumya Raychaudhuri - publisher: Cold Spring Harbor Laboratory - date: '2023-01-09' - link: https://doi.org/gsfpj5 - image: https://www.biorxiv.org/content/biorxiv/early/2023/01/09/2023.01.09.522731/F1.large.jpg - tags: - - cell painting - - data integration - - cell morphology - id: doi:10.1016/j.cels.2022.10.001 title: Morphology and gene expression profiling provide complementary information for mapping cell state diff --git a/_data/sources.yaml b/_data/sources.yaml index b19542e..fdb376d 100644 --- a/_data/sources.yaml +++ b/_data/sources.yaml @@ -1,3 +1,46 @@ +- id: 10.1101/2024.03.13.584858 + image: https://github.com/WayScience/phenotypic_profiling/blob/main/7.figures/figures/figure1_panelB.png?raw=true + tags: + - single-cell + - microscopy + - phenotype + extra-links: + - type: source + link: https://github.com/WayScience/phenotypic_profiling/ + text: Analysis + - type: data + link: https://github.com/WayScience/mitocheck_data + text: Data + - type: software + link: https://github.com/WayScience/IDR_Stream + text: IDR_stream Software + +- id: 10.1038/s41467-023-44045-w + image: https://www.biorxiv.org/content/biorxiv/early/2023/01/09/2023.01.09.522731/F1.large.jpg + tags: + - cell painting + - data integration + - cell morphology + +- id: 10.1101/2024.04.01.587631 + image: https://www.biorxiv.org/content/biorxiv/early/2024/04/02/2024.04.01.587631/F1.large.jpg + tags: + - drug screening metric + - software + - profiling + extra-links: + - type: source + link: https://github.com/cytomining/copairs + text: Software + +- id: 10.7554/eLife.91362 + image: https://raw.githubusercontent.com/broadinstitute/profiling-resistance-mechanisms/master/3.resistance-signature/figures/bortezomib_roc_curve.png + repo: https://github.com/broadinstitute/profiling-resistance-mechanisms + tags: + - cancer resistance + - cell painting + - open science + - id: 10.1016/j.slasd.2023.08.009 image: https://ars.els-cdn.com/content/image/1-s2.0-S2472555223000667-gr2.jpg tags: @@ -34,13 +77,6 @@ - brain tumor - open science -- id: 10.1101/2023.01.09.522731 - image: https://www.biorxiv.org/content/biorxiv/early/2023/01/09/2023.01.09.522731/F1.large.jpg - tags: - - cell painting - - data integration - - cell morphology - - id: doi:10.1016/j.cels.2022.10.001 image: https://www.cell.com/cms/attachment/55912f54-18d9-4ee9-8374-6f24f9d15bbc/fx1.jpg repo: https://github.com/broadinstitute/lincs-profiling-complementarity diff --git a/_members/gregory-way.md b/_members/gregory-way.md index abd5e91..8c6ed45 100644 --- a/_members/gregory-way.md +++ b/_members/gregory-way.md @@ -10,14 +10,14 @@ aliases: - G.P. Way - G. P. Way - gwaygenomics - - gwayscience + - gwaybio - gway links: orcid: 0000-0002-0503-9348 home-page: waysciencelab.com email: gregory.way@gmail.com - github: gwaygenomics - twitter: gwayscience + github: gwaybio + twitter: gwaybio google-scholar:: iDKZaA4AAAAJ ---