From 2d17270949a06d89bcca0856658b8bced147245f Mon Sep 17 00:00:00 2001 From: Alexandru Mahmoud Date: Wed, 6 Nov 2024 18:43:04 -0500 Subject: [PATCH 1/2] Update Dockerfile --- Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Dockerfile b/Dockerfile index 97c8357..e2b6423 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM bioconductor/bioconductor_docker:devel +FROM bioconductor/bioconductor_docker:3.19 WORKDIR /home/rstudio From a9a1898509b90ceaa2ca131ef9a662e728cff6d2 Mon Sep 17 00:00:00 2001 From: Alexandru Mahmoud Date: Wed, 6 Nov 2024 19:20:08 -0500 Subject: [PATCH 2/2] 3.20 with libtiff inking --- Dockerfile | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Dockerfile b/Dockerfile index e2b6423..906f613 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,9 +1,9 @@ -FROM bioconductor/bioconductor_docker:3.19 +FROM bioconductor/bioconductor_docker:3.20 WORKDIR /home/rstudio COPY --chown=rstudio:rstudio . /home/rstudio/ -RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask=FALSE)" - -RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())" +RUN ln -s /usr/lib/x86_64-linux-gnu/libtiff.so.6 /usr/lib/x86_64-linux-gnu/libtiff.so.5 && \ + Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask=FALSE)" && \ + Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"