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AOCS_137.test1.Somatic.HighConfidenceConsequence.snv.vcf
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AOCS_137.test1.Somatic.HighConfidenceConsequence.snv.vcf
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##fileformat=VCFv4.0
##fileDate=02102013
##FILTER=<ID=File1Only,Description="Variant was called with qSNP">
##FILTER=<ID=File2Only,Description="Variant was called with GATK">
##FILTER=<ID=BothFiles,Description="Variant was called with qSNP and GATK">
##INFO=<ID=GENE,Type=String,Description="Hugo gene annotation">
##INFO=<ID=TYPE,Type=String,Description="Variant classification annotation">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
3 171377090 . T C . File1Only GENE=PLD1;TYPE=Splice_Site GT 0/1
5 140554539 . C T . File1Only GENE=PCDHB7;TYPE=Missense_Mutation GT 0/1
8 145748768 . G C . File1Only GENE=LRRC24;TYPE=Silent GT 0/1
19 12801014 . T A . File1Only GENE=FBXW9;TYPE=Splice_Site GT 0/1
1 145014280 . A G . File1Only GENE=PDE4DIP;TYPE=Silent GT 0/1
9 39099934 . G C . File1Only GENE=CNTNAP3;TYPE=Missense_Mutation GT 0/1
7 72396980 . C G . File1Only GENE=POM121;TYPE=Missense_Mutation GT 0/1
17 34803439 . G T . File1Only GENE=TBC1D3G;TYPE=Splice_Site GT 0/1
9 123787728 . T A . File2Only GENE=C5;TYPE=Splice_Site GT 0/1
1 151263683 . T A . File2Only GENE=ZNF687;TYPE=Nonstop_Mutation GT 0/1
9 154792 . T G . File2Only GENE=CBWD1;TYPE=Missense_Mutation GT 0/1
X 68725337 . C T . File2Only GENE=FAM155B;TYPE=Missense_Mutation GT 0/1
15 23609866 . A G . File2Only GENE=GOLGA8S;TYPE=Splice_Site GT 0/1
17 6920585 . C T . File2Only GENE=RNASEK-C17orf49;TYPE=Missense_Mutation GT 0/1
4 191002916 . C T . File2Only GENE=DUX4L4;TYPE=Missense_Mutation GT 1/1
3 195507445 . T A . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
16 70883753 . A C . File2Only GENE=HYDIN;TYPE=Missense_Mutation GT 0/1
7 107738866 . C T . File2Only GENE=LAMB4;TYPE=Missense_Mutation GT 0/1
15 22742863 . G A . File2Only GENE=GOLGA6L1;TYPE=Silent GT 0/1
1 152883756 . C A . File2Only GENE=IVL;TYPE=Missense_Mutation GT 0/1
7 102196401 . T G . File2Only GENE=SPDYE2;TYPE=Missense_Mutation GT 0/1
3 195505862 . C T . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 0/1
19 56312544 . T A . File2Only GENE=NLRP11;TYPE=Splice_Site GT 0/1
4 1388695 . T C . File2Only GENE=CRIPAK;TYPE=Silent GT 0/1
19 53879566 . C G . File2Only GENE=ZNF525;TYPE=Missense_Mutation GT 0/1
13 19312548 rs77959098 A G . File2Only GENE=LINC00417;TYPE=Splice_Site GT 0/1
11 1018253 . G A . File2Only GENE=MUC6;TYPE=Silent GT 0/1
1 236924405 . A T . File2Only GENE=ACTN2;TYPE=Nonsense_Mutation GT 0/1
19 53770694 . G A . File2Only GENE=VN1R4;TYPE=Silent GT 0/1
3 195514646 . C T . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 1/1
3 119187842 . G C . File2Only GENE=POGLUT1;TYPE=Missense_Mutation GT 0/1
3 195514643 . T G . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 1/1
17 20360881 . A G . File2Only GENE=LGALS9B;TYPE=Splice_Site GT 0/1
16 33962434 rs74692475 C G . File2Only GENE=LINC00273;TYPE=Missense_Mutation GT 0/1
7 107738868 . G A . File2Only GENE=LAMB4;TYPE=Missense_Mutation GT 0/1
3 195514645 . T C . File2Only GENE=MUC4;TYPE=Missense_Mutation GT 1/1
1 236924401 . G A . File2Only GENE=ACTN2;TYPE=Missense_Mutation GT 0/1
1 236924398 . C G . File2Only GENE=ACTN2;TYPE=Missense_Mutation GT 0/1
1 236924396 . T A . File2Only GENE=ACTN2;TYPE=Missense_Mutation GT 0/1
1 26228179 . A C . BothFiles GENE=STMN1;TYPE=Splice_Site GT 0/1
6 42019114 . C A . BothFiles GENE=TAF8;TYPE=Missense_Mutation GT 0/1
8 145170849 . C G . BothFiles GENE=KIAA1875;TYPE=Nonsense_Mutation GT 0/1
10 134999764 . G C . BothFiles GENE=KNDC1;TYPE=Missense_Mutation GT 0/1
2 201873712 . A C . BothFiles GENE=FAM126B;TYPE=Missense_Mutation GT 1/1
2 30829044 . A G . BothFiles GENE=LCLAT1;TYPE=Missense_Mutation GT 0/1
5 172113280 . G A . BothFiles GENE=NEURL1B;TYPE=Silent GT 0/1
6 72892424 . C T . BothFiles GENE=RIMS1;TYPE=Missense_Mutation GT 0/1
X 100076581 . G A . BothFiles GENE=CSTF2;TYPE=Missense_Mutation GT 0/1
4 103553360 . C A . BothFiles GENE=MANBA;TYPE=Missense_Mutation GT 1/1
22 23922252 . T C . BothFiles GENE=IGLL1;TYPE=Silent GT 0/1
4 159138498 . C T . BothFiles GENE=TMEM144;TYPE=Silent GT 1/1
5 39119695 . T C . BothFiles GENE=FYB;TYPE=Missense_Mutation GT 0/1
1 41007354 . G A . BothFiles GENE=ZNF684;TYPE=Silent GT 0/1
15 75135396 . G A . BothFiles GENE=ULK3;TYPE=Silent GT 0/1
17 7578406 rs28934578 C T . BothFiles GENE=TP53;TYPE=Missense_Mutation GT 1/1
22 19163654 . T C . BothFiles GENE=SLC25A1;TYPE=Missense_Mutation GT 0/1
2 54893128 . G A . BothFiles GENE=SPTBN1;TYPE=Missense_Mutation GT 0/1
4 5743472 . C T . BothFiles GENE=EVC;TYPE=Silent GT 1/1
14 102676069 . C A . BothFiles GENE=WDR20;TYPE=Missense_Mutation GT 0/1
20 17623649 . C A . BothFiles GENE=RRBP1;TYPE=Missense_Mutation GT 0/1
11 70221071 . A G . BothFiles GENE=PPFIA1;TYPE=Missense_Mutation GT 0/1
13 51918596 . C T . BothFiles GENE=SERPINE3;TYPE=Silent GT 1/1
3 130852136 . A G . BothFiles GENE=NEK11;TYPE=Missense_Mutation GT 0/1
7 91755592 . C A . BothFiles GENE=CYP51A1;TYPE=Missense_Mutation GT 0/1
5 179994859 rs142504544 G C . BothFiles GENE=CNOT6;TYPE=Missense_Mutation GT 0/1
3 42615042 . G A . BothFiles GENE=SEC22C;TYPE=Splice_Site GT 1/1
7 100677806 . C A . BothFiles GENE=MUC17;TYPE=Missense_Mutation GT 0/1
1 23419430 . T A . BothFiles GENE=LUZP1;TYPE=Missense_Mutation GT 0/1
9 133491901 . G A . BothFiles GENE=FUBP3;TYPE=Silent GT 1/1
6 109225467 . A T . BothFiles GENE=ARMC2;TYPE=Silent GT 0/1
5 140711740 . C T . BothFiles GENE=PCDHGA1;TYPE=Nonsense_Mutation GT 0/1
2 191900904 . G A . BothFiles GENE=STAT4;TYPE=Missense_Mutation GT 1/1
20 61873919 . A G . BothFiles GENE=NKAIN4;TYPE=Missense_Mutation GT 0/1
15 77908204 . C T . BothFiles GENE=LINGO1;TYPE=Missense_Mutation GT 0/1
5 24487987 . G T . BothFiles GENE=CDH10;TYPE=Missense_Mutation GT 0/1
5 145317798 . A G . BothFiles GENE=SH3RF2;TYPE=Missense_Mutation GT 0/1
11 106807436 . G T . BothFiles GENE=GUCY1A2;TYPE=Splice_Site GT 0/1
3 197541924 . G A . BothFiles GENE=LRCH3;TYPE=Splice_Site GT 0/1
4 77089625 . G A . BothFiles GENE=SCARB2;TYPE=Missense_Mutation GT 0/1
6 117248511 . C G . BothFiles GENE=RFX6;TYPE=Nonsense_Mutation GT 0/1
7 150490309 . G A . BothFiles GENE=TMEM176B;TYPE=Missense_Mutation GT 0/1
7 47847979 . C T . BothFiles GENE=PKD1L1;TYPE=Missense_Mutation GT 0/1
1 206665971 . G C . BothFiles GENE=C1orf147;TYPE=Missense_Mutation GT 0/1
14 24542134 . C T . BothFiles GENE=CPNE6;TYPE=Splice_Site GT 0/1
18 67993507 . T C . BothFiles GENE=SOCS6;TYPE=Missense_Mutation GT 0/1
1 169796897 . T C . BothFiles GENE=C1orf112;TYPE=Missense_Mutation GT 0/1
2 46608857 . G A . BothFiles GENE=EPAS1;TYPE=Missense_Mutation GT 0/1
12 81004232 . A G . BothFiles GENE=PTPRQ;TYPE=Silent GT 0/1
6 117215217 . G A . BothFiles GENE=RFX6;TYPE=Missense_Mutation GT 0/1
5 33596112 . C A . BothFiles GENE=ADAMTS12;TYPE=Missense_Mutation GT 0/1
2 120438761 . T C . BothFiles GENE=TMEM177;TYPE=Missense_Mutation GT 0/1
19 23545392 . T C . BothFiles GENE=ZNF91;TYPE=Missense_Mutation GT 0/1
3 170011171 . G T . BothFiles GENE=PRKCI;TYPE=Splice_Site GT 0/1
3 46852596 . C A . BothFiles GENE=PRSS45;TYPE=Splice_Site GT 0/1
22 36712573 . C T . BothFiles GENE=MYH9;TYPE=Missense_Mutation GT 0/1
11 55761684 . C T . BothFiles GENE=OR5F1;TYPE=Missense_Mutation GT 0/1
6 138892993 . A C . BothFiles GENE=NHSL1;TYPE=Missense_Mutation GT 0/1
1 151773586 . A T . BothFiles GENE=LINGO4;TYPE=Missense_Mutation GT 0/1
17 60827810 . G C . BothFiles GENE=MARCH10;TYPE=Missense_Mutation GT 0/1
2 38179238 . A G . BothFiles GENE=FAM82A1;TYPE=Missense_Mutation GT 0/1
9 140069436 . G T . BothFiles GENE=ANAPC2;TYPE=Silent GT 1/1
6 31612738 . G C . BothFiles GENE=BAG6;TYPE=Missense_Mutation GT 0/1
7 140301899 . C T . BothFiles GENE=DENND2A;TYPE=Missense_Mutation GT 0/1
6 159465170 . C A . BothFiles GENE=TAGAP;TYPE=Silent GT 0/1
3 121421378 . C G . BothFiles GENE=GOLGB1;TYPE=Missense_Mutation GT 0/1
11 2434782 . C T . BothFiles GENE=TRPM5;TYPE=Missense_Mutation GT 0/1
3 196311184 . G A . BothFiles GENE=FBXO45;TYPE=Missense_Mutation GT 0/1
19 843459 . A G . BothFiles GENE=PRTN3;TYPE=Splice_Site GT 1/1
17 48155449 . C T . BothFiles GENE=ITGA3;TYPE=Silent GT 1/1
16 476412 . A T . BothFiles GENE=RAB11FIP3;TYPE=Missense_Mutation GT 1/1
10 25314051 . T C . BothFiles GENE=THNSL1;TYPE=Silent GT 1/1
18 77132860 . G T . BothFiles GENE=ATP9B;TYPE=Missense_Mutation GT 1/1
19 12865543 . C A . BothFiles GENE=BEST2;TYPE=Missense_Mutation GT 0/1
3 150398297 . A C . BothFiles GENE=FAM194A;TYPE=Missense_Mutation GT 0/1
1 43905389 . G C . BothFiles GENE=SZT2;TYPE=Missense_Mutation GT 0/1
19 42392332 . G C . BothFiles GENE=ARHGEF1;TYPE=Missense_Mutation GT 0/1
3 130282059 . A T . BothFiles GENE=COL6A6;TYPE=Missense_Mutation GT 0/1
5 110062328 . C T . BothFiles GENE=TMEM232;TYPE=Splice_Site GT 1/1
5 174152015 . A T . BothFiles GENE=MSX2;TYPE=Missense_Mutation GT 1/1
6 72974728 . A C . BothFiles GENE=RIMS1;TYPE=Missense_Mutation GT 0/1
6 160229830 . G T . BothFiles GENE=PNLDC1;TYPE=Silent GT 0/1
2 242147055 . G C . BothFiles GENE=ANO7;TYPE=Missense_Mutation GT 0/1
8 131129235 . G T . BothFiles GENE=ASAP1;TYPE=Missense_Mutation GT 0/1
X 22291870 . A G . BothFiles GENE=ZNF645;TYPE=Silent GT 1/1
3 111999587 . A G . BothFiles GENE=SLC9C1;TYPE=Silent GT 0/1
1 223177223 . G C . BothFiles GENE=DISP1;TYPE=Missense_Mutation GT 0/1
19 18576712 . T C . BothFiles GENE=ELL;TYPE=Missense_Mutation GT 0/1
6 56417150 . G A . BothFiles GENE=DST;TYPE=Silent GT 0/1
19 17430418 . C T . BothFiles GENE=DDA1;TYPE=Missense_Mutation GT 0/1
1 228451872 . G A . BothFiles GENE=OBSCN;TYPE=Silent GT 0/1
1 906305 . G C . BothFiles GENE=PLEKHN1;TYPE=Missense_Mutation GT 0/1
18 59221512 . C T . BothFiles GENE=CDH20;TYPE=Missense_Mutation GT 0/1
19 55913069 . C T . BothFiles GENE=UBE2S;TYPE=Missense_Mutation GT 0/1
1 906304 . A G . BothFiles GENE=PLEKHN1;TYPE=Missense_Mutation GT 0/1
7 73636019 . G C . BothFiles GENE=LAT2;TYPE=Missense_Mutation GT 0/1
6 116757383 . G T . BothFiles GENE=DSE;TYPE=Silent GT 0/1
6 32713648 . A G . BothFiles GENE=HLA-DQA2;TYPE=Missense_Mutation GT 0/1
1 247608002 . C A . BothFiles GENE=NLRP3;TYPE=Missense_Mutation GT 0/1
16 81388253 . C A . BothFiles GENE=GAN;TYPE=Missense_Mutation GT 0/1
12 46320660 . G A . BothFiles GENE=SCAF11;TYPE=Missense_Mutation GT 0/1
2 21250857 . T G . BothFiles GENE=APOB;TYPE=Missense_Mutation GT 0/1
6 110423296 . T A . BothFiles GENE=WASF1;TYPE=Silent GT 0/1
1 16958018 . C T . BothFiles GENE=CROCCP2;TYPE=Splice_Site GT 0/1
19 52147100 . C A . BothFiles GENE=SIGLEC14;TYPE=Missense_Mutation GT 0/1
12 994322 . T G . BothFiles GENE=WNK1;TYPE=Missense_Mutation GT 0/1
4 82366901 . C A . BothFiles GENE=RASGEF1B;TYPE=Missense_Mutation GT 0/1
6 165806227 . C T . BothFiles GENE=PDE10A;TYPE=Missense_Mutation GT 0/1
17 43893849 . G C . BothFiles GENE=CRHR1;TYPE=Missense_Mutation GT 0/1
9 35957815 . G A . BothFiles GENE=OR2S2;TYPE=Missense_Mutation GT 0/1
6 46827068 . T A . BothFiles GENE=GPR116;TYPE=Missense_Mutation GT 0/1
19 37853888 . T C . BothFiles GENE=HKR1;TYPE=Silent GT 0/1
1 20412605 . G C . BothFiles GENE=PLA2G5;TYPE=Missense_Mutation GT 0/1
6 90457087 . C T . BothFiles GENE=MDN1;TYPE=Missense_Mutation GT 0/1
3 185161289 . G C . BothFiles GENE=MAP3K13;TYPE=Missense_Mutation GT 0/1
14 62207345 . G C . BothFiles GENE=HIF1A;TYPE=Splice_Site GT 0/1
X 48791845 . G A . BothFiles GENE=OTUD5;TYPE=Silent GT 0/1
12 76796519 . C G . BothFiles GENE=OSBPL8;TYPE=Missense_Mutation GT 0/1
10 70509010 . A T . BothFiles GENE=CCAR1;TYPE=Missense_Mutation GT 1/1
13 77754394 . G C . BothFiles GENE=MYCBP2;TYPE=Silent GT 1/1
9 104152897 . G T . BothFiles GENE=MRPL50;TYPE=Missense_Mutation GT 0/1
19 8616975 . T A . BothFiles GENE=MYO1F;TYPE=Missense_Mutation GT 0/1
7 155093322 . A T . BothFiles GENE=INSIG1;TYPE=Missense_Mutation GT 0/1
16 2156686 . C T . BothFiles GENE=PKD1;TYPE=Splice_Site GT 1/1
7 92148397 . A T . BothFiles GENE=PEX1;TYPE=Splice_Site GT 0/1
12 21329817 . A T . BothFiles GENE=SLCO1B1;TYPE=Missense_Mutation GT 0/1
10 17271526 . C G . BothFiles GENE=VIM;TYPE=Silent GT 1/1
12 52681819 . G A . BothFiles GENE=KRT81;TYPE=Silent GT 0/1
X 69424259 . A G . BothFiles GENE=DGAT2L6;TYPE=Missense_Mutation GT 0/1
20 17581649 . A C . BothFiles GENE=DSTN;TYPE=Missense_Mutation GT 0/1
3 89259356 . A G . BothFiles GENE=EPHA3;TYPE=Missense_Mutation GT 0/1
3 197428651 . T C . BothFiles GENE=KIAA0226;TYPE=Missense_Mutation GT 0/1
9 129977053 . G C . BothFiles GENE=RALGPS1;TYPE=Missense_Mutation GT 1/1
19 19774218 . G C . BothFiles GENE=ATP13A1;TYPE=Missense_Mutation GT 0/1
3 123819381 . C T . BothFiles GENE=KALRN;TYPE=Splice_Site GT 0/1
3 149290735 . G C . BothFiles GENE=WWTR1;TYPE=Missense_Mutation GT 0/1
1 103405969 . G C . BothFiles GENE=COL11A1;TYPE=Missense_Mutation GT 0/1
11 4936858 . G C . BothFiles GENE=OR51G2;TYPE=Missense_Mutation GT 1/1
6 93974311 . C A . BothFiles GENE=EPHA7;TYPE=Splice_Site GT 0/1
19 4217356 . G C . BothFiles GENE=ANKRD24;TYPE=Missense_Mutation GT 1/1
3 149570332 . T A . BothFiles GENE=RNF13;TYPE=Missense_Mutation GT 0/1
12 132516510 . A T . BothFiles GENE=EP400;TYPE=Missense_Mutation GT 0/1
7 129394854 . C T . BothFiles GENE=NRF1;TYPE=Splice_Site GT 0/1
2 26204756 . G C . BothFiles GENE=KIF3C;TYPE=Missense_Mutation GT 0/1
16 66948151 . G C . BothFiles GENE=CDH16;TYPE=Missense_Mutation GT 0/1
X 103034777 . C T . BothFiles GENE=PLP1;TYPE=Splice_Site GT 0/1
2 217124318 . T C . BothFiles GENE=MARCH4;TYPE=Missense_Mutation GT 0/1
9 37518174 . A T . BothFiles GENE=FBXO10;TYPE=Missense_Mutation GT 0/1
1 228554140 . C G . BothFiles GENE=OBSCN;TYPE=Missense_Mutation GT 0/1
10 50025348 . A G . BothFiles GENE=WDFY4;TYPE=Missense_Mutation GT 1/1
3 98312282 . C G . BothFiles GENE=CPOX;TYPE=Missense_Mutation GT 0/1
22 45221445 . A C . BothFiles GENE=PRR5-ARHGAP8;TYPE=Missense_Mutation GT 1/1
1 248487771 . T A . BothFiles GENE=OR2M7;TYPE=Missense_Mutation GT 0/1
7 48046851 . C G . BothFiles GENE=SUN3;TYPE=Missense_Mutation GT 0/1
17 80367239 . C G . BothFiles GENE=OGFOD3;TYPE=Splice_Site GT 0/1
1 9931248 . G C . BothFiles GENE=CTNNBIP1;TYPE=Missense_Mutation GT 0/1
6 144835135 . G A . BothFiles GENE=UTRN;TYPE=Missense_Mutation GT 0/1