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Stephan Preibisch edited this page Jan 31, 2022 · 12 revisions

Goals for the Bioimage ome.zarr Hackathon

Current State

https://github.com/PreibischLab/STIM (Github with documentation)

Runnable from Java
Runnable via CmdLine

https://github.com/rajewsky-lab/stimwrap (current Python bindings)

https://www.biorxiv.org/content/10.1101/2021.12.07.471629v1 (Publication)

Goals

Support ome.zarr & HDF5 in addition to N5 (Stephan)
Distributed Spark processing (Marwan)
Improve python bindings (Marwan)
- ome.zarr, N5, HDF5 support
- make some functionality available in napari?