Sampling example notebook not running in JupyterBook

[facusapienza21]

@Swanson-Hysell the sampling notebook is printing an error when executed by JupyterBook. If you cannot fix this error, you can always uncomments the notebook in the _config.yml under executed_patterns to ignore the execution of this notebook and instead just display it.

[Swanson-Hysell]

This error should be fixed by pull request #44

[facusapienza21]

@Swanson-Hysell I integrated #48 (copy of #44) and the problem persists in the notebook. Do you think this could be a problem coming from the environment and the version of ipymag you are using?

[Swanson-Hysell]

The issue looks to be with the cartopy version. Here is the list of my paleosampling conda environment: conda_packages.txt

Name Version Build Channel
accessible-pygments 0.0.4 pyhd8ed1ab_0 conda-forge
alabaster 0.7.13 pyhd8ed1ab_0 conda-forge
anyio 4.0.0 pyhd8ed1ab_0 conda-forge
appnope 0.1.3 pyhd8ed1ab_0 conda-forge
argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py311h5547dcb_3 conda-forge
arrow 1.2.3 pyhd8ed1ab_0 conda-forge
asttokens 2.4.0 pyhd8ed1ab_0 conda-forge
async-lru 2.0.4 pyhd8ed1ab_0 conda-forge
attrs 23.1.0 pyh71513ae_1 conda-forge
babel 2.12.1 pyhd8ed1ab_1 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.5 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.12.2 pyha770c72_0 conda-forge
bleach 6.0.0 pyhd8ed1ab_0 conda-forge
brotli 1.1.0 h0dc2134_0 conda-forge
brotli-bin 1.1.0 h0dc2134_0 conda-forge
brotli-python 1.1.0 py311hdf8f085_0 conda-forge
bzip2 1.0.8 h0d85af4_4 conda-forge
c-ares 1.19.1 h0dc2134_0 conda-forge
ca-certificates 2023.7.22 h8857fd0_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cartopy 0.22.0 py311hab14417_0 conda-forge
certifi 2023.7.22 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py311ha86e640_3 conda-forge
charset-normalizer 3.2.0 pyhd8ed1ab_0 conda-forge
click 8.1.7 unix_pyh707e725_0 conda-forge
cloudpickle 2.2.1 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
comm 0.1.4 pyhd8ed1ab_0 conda-forge
contourpy 1.1.0 py311h5fe6e05_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cytoolz 0.12.2 py311h2725bcf_0 conda-forge
dask-core 2023.9.1 pyhd8ed1ab_0 conda-forge
dataclasses 0.8 pyhc8e2a94_3 conda-forge
debugpy 1.8.0 py311hdf8f085_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
distributed 2023.9.1 pyhd8ed1ab_0 conda-forge
docutils 0.17.1 py311h6eed73b_3 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
et_xmlfile 1.1.0 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.1.3 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hf0c8a7f_1 conda-forge
fonttools 4.42.1 py311h2725bcf_0 conda-forge
fqdn 1.5.1 pyhd8ed1ab_0 conda-forge
freetype 2.12.1 h60636b9_2 conda-forge
fsspec 2023.9.0 pyh1a96a4e_0 conda-forge
future 0.18.3 pyhd8ed1ab_0 conda-forge
geos 3.12.0 he965462_0 conda-forge
gettext 0.21.1 h8a4c099_0 conda-forge
glib 2.78.0 h7d26f99_0 conda-forge
glib-tools 2.78.0 h7d26f99_0 conda-forge
greenlet 2.0.2 py311hdf8f085_1 conda-forge
gst-plugins-base 1.22.5 hb5d3a86_1 conda-forge
gstreamer 1.22.5 h840fbdc_1 conda-forge
icu 73.2 hf5e326d_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 6.8.0 pyha770c72_0 conda-forge
importlib_metadata 6.8.0 hd8ed1ab_0 conda-forge
importlib_resources 6.0.1 pyhd8ed1ab_0 conda-forge
ipykernel 6.25.2 pyh1050b4e_0 conda-forge
ipyparallel 8.6.1 pyhd8ed1ab_0 conda-forge
ipython 8.15.0 pyh31c8845_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.1.1 pyhd8ed1ab_0 conda-forge
isoduration 20.11.0 pyhd8ed1ab_0 conda-forge
jedi 0.19.0 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
joblib 1.3.2 pyhd8ed1ab_0 conda-forge
json5 0.9.14 pyhd8ed1ab_0 conda-forge
jsonpointer 2.4 py311h6eed73b_2 conda-forge
jsonschema 4.19.0 pyhd8ed1ab_1 conda-forge
jsonschema-specifications 2023.7.1 pyhd8ed1ab_0 conda-forge
jsonschema-with-format-nongpl 4.19.0 pyhd8ed1ab_1 conda-forge
jupyter 1.0.0 py311h6eed73b_8 conda-forge
jupyter-book 0.15.1 pyhd8ed1ab_0 conda-forge
jupyter-cache 0.6.1 pyhd8ed1ab_0 conda-forge
jupyter-lsp 2.2.0 pyhd8ed1ab_0 conda-forge
jupyter_client 8.3.1 pyhd8ed1ab_0 conda-forge
jupyter_console 6.6.3 pyhd8ed1ab_0 conda-forge
jupyter_core 5.3.1 py311h6eed73b_0 conda-forge
jupyter_events 0.7.0 pyhd8ed1ab_2 conda-forge
jupyter_server 2.7.3 pyhd8ed1ab_0 conda-forge
jupyter_server_terminals 0.4.4 pyhd8ed1ab_1 conda-forge
jupyterlab 4.0.5 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.25.0 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.9 pyhd8ed1ab_0 conda-forge
kiwisolver 1.4.5 py311h5fe6e05_0 conda-forge
krb5 1.21.2 hb884880_0 conda-forge
latexcodec 2.0.1 pyh9f0ad1d_0 conda-forge
lcms2 2.15 h2dcdeff_1 conda-forge
lerc 4.0.0 hb486fe8_0 conda-forge
libblas 3.9.0 18_osx64_openblas conda-forge
libbrotlicommon 1.1.0 h0dc2134_0 conda-forge
libbrotlidec 1.1.0 h0dc2134_0 conda-forge
libbrotlienc 1.1.0 h0dc2134_0 conda-forge
libcblas 3.9.0 18_osx64_openblas conda-forge
libclang 15.0.7 default_hdb78580_3 conda-forge
libclang13 15.0.7 default_h953c2e9_3 conda-forge
libcurl 8.3.0 h5f667d7_0 conda-forge
libcxx 16.0.6 hd57cbcb_0 conda-forge
libdeflate 1.18 hac1461d_0 conda-forge
libedit 3.1.20191231 h0678c8f_2 conda-forge
libev 4.33 haf1e3a3_1 conda-forge
libexpat 2.5.0 hf0c8a7f_1 conda-forge
libffi 3.4.2 h0d85af4_5 conda-forge
libgfortran 5.0.0 13_2_0_h97931a8_1 conda-forge
libgfortran5 13.2.0 h2873a65_1 conda-forge
libglib 2.78.0 hc62aa5d_0 conda-forge
libiconv 1.17 hac89ed1_0 conda-forge
libjpeg-turbo 2.1.5.1 h0dc2134_1 conda-forge
liblapack 3.9.0 18_osx64_openblas conda-forge
libllvm15 15.0.7 he4b1e75_3 conda-forge
libnghttp2 1.52.0 he2ab024_0 conda-forge
libogg 1.3.4 h35c211d_1 conda-forge
libopenblas 0.3.24 openmp_h48a4ad5_0 conda-forge
libopus 1.3.1 hc929b4f_1 conda-forge
libpng 1.6.39 ha978bb4_0 conda-forge
libpq 15.4 h3df487d_0 conda-forge
libsodium 1.0.18 hbcb3906_1 conda-forge
libsqlite 3.43.0 h58db7d2_0 conda-forge
libssh2 1.11.0 hd019ec5_0 conda-forge
libtiff 4.5.1 hf955e92_1 conda-forge
libvorbis 1.3.7 h046ec9c_0 conda-forge
libwebp-base 1.3.2 h0dc2134_0 conda-forge
libxcb 1.15 hb7f2c08_0 conda-forge
libxml2 2.11.5 h3346baf_1 conda-forge
libzlib 1.2.13 h8a1eda9_5 conda-forge
linkify-it-py 2.0.0 pyhd8ed1ab_0 conda-forge
llvm-openmp 16.0.6 hff08bdf_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
markdown-it-py 2.2.0 pyhd8ed1ab_0 conda-forge
markupsafe 2.1.3 py311h2725bcf_0 conda-forge
matplotlib 3.7.2 py311h6eed73b_0 conda-forge
matplotlib-base 3.7.2 py311haff9b01_0 conda-forge
matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge
mdit-py-plugins 0.4.0 pyhd8ed1ab_0 conda-forge
mdurl 0.1.0 pyhd8ed1ab_0 conda-forge
mistune 3.0.1 pyhd8ed1ab_0 conda-forge
msgpack-python 1.0.5 py311hd2070f0_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mysql-common 8.0.33 h794ff91_4 conda-forge
mysql-libs 8.0.33 he48d296_4 conda-forge
myst-nb 0.17.2 pyhd8ed1ab_0 conda-forge
myst-parser 0.18.1 pyhd8ed1ab_0 conda-forge
nbclient 0.7.4 pyhd8ed1ab_0 conda-forge
nbconvert 7.8.0 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.8.0 pyhd8ed1ab_0 conda-forge
nbconvert-pandoc 7.8.0 pyhd8ed1ab_0 conda-forge
nbformat 5.9.2 pyhd8ed1ab_0 conda-forge
ncurses 6.4 hf0c8a7f_0 conda-forge
nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge
notebook 7.0.3 pyhd8ed1ab_0 conda-forge
notebook-shim 0.2.3 pyhd8ed1ab_0 conda-forge
nspr 4.35 hea0b92c_0 conda-forge
nss 3.92 hd6ac835_0 conda-forge
numpy 1.25.2 py311hc44ba51_0 conda-forge
openjpeg 2.5.0 h13ac156_2 conda-forge
openpyxl 3.1.2 py311h2725bcf_0 conda-forge
openssl 3.1.2 h8a1eda9_0 conda-forge
overrides 7.4.0 pyhd8ed1ab_0 conda-forge
packaging 23.1 pyhd8ed1ab_0 conda-forge
pandas 2.1.0 py311hab14417_0 conda-forge
pandoc 3.1.3 h9d075a6_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
partd 1.4.0 pyhd8ed1ab_1 conda-forge
pathlib2 2.3.7.post1 py311h6eed73b_2 conda-forge
patsy 0.5.3 pyhd8ed1ab_0 conda-forge
pcre2 10.40 h1c4e4bc_0 conda-forge
pexpect 4.8.0 pyh1a96a4e_2 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pillow 10.0.0 py311h7cb0e2d_0 conda-forge
pip 23.2.1 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge
platformdirs 3.10.0 pyhd8ed1ab_0 conda-forge
ply 3.11 py_1 conda-forge
pmagpy 4.2.106 pypi_0 pypi
proj 9.2.1 hc8d59c9_0 conda-forge
prometheus_client 0.17.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.39 pyha770c72_0 conda-forge
prompt_toolkit 3.0.39 hd8ed1ab_0 conda-forge
psutil 5.9.5 py311h5547dcb_0 conda-forge
pthread-stubs 0.4 hc929b4f_1001 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge
pybtex 0.24.0 pyhd8ed1ab_2 conda-forge
pybtex-docutils 1.0.3 py311h6eed73b_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydata-sphinx-theme 0.13.3 pyhd8ed1ab_0 conda-forge
pygments 2.16.1 pyhd8ed1ab_0 conda-forge
pyobjc-core 9.2 py311hf110eff_0 conda-forge
pyobjc-framework-cocoa 9.2 py311hf110eff_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyproj 3.6.0 py311h854a015_1 conda-forge
pyqt 5.15.9 py311h5b1a2bc_4 conda-forge
pyqt5-sip 12.12.2 py311h46b81f0_4 conda-forge
pyshp 2.3.1 pyhd8ed1ab_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
python 3.11.5 h30d4d87_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.18.0 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge
python-tzdata 2023.3 pyhd8ed1ab_0 conda-forge
python-wget 3.2 py_0 conda-forge
python.app 1.4 py311h5547dcb_1 conda-forge
python_abi 3.11 3_cp311 conda-forge
pytz 2023.3.post1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0.1 py311h2725bcf_0 conda-forge
pyzmq 25.1.1 py311h5dacc12_0 conda-forge
qt-main 5.15.8 hc03889f_16 conda-forge
qtconsole 5.4.4 pyhd8ed1ab_0 conda-forge
qtconsole-base 5.4.4 pyha770c72_0 conda-forge
qtpy 2.4.0 pyhd8ed1ab_0 conda-forge
readline 8.2 h9e318b2_1 conda-forge
referencing 0.30.2 pyhd8ed1ab_0 conda-forge
requests 2.31.0 pyhd8ed1ab_0 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge
rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge
rpds-py 0.10.3 py311h299eb51_0 conda-forge
scikit-learn 1.3.0 py311h83feae1_0 conda-forge
scipy 1.11.2 py311h16c3c4d_1 conda-forge
seaborn 0.12.2 hd8ed1ab_0 conda-forge
seaborn-base 0.12.2 pyhd8ed1ab_0 conda-forge
send2trash 1.8.2 pyhd1c38e8_0 conda-forge
setuptools 68.2.2 pyhd8ed1ab_0 conda-forge
shapely 2.0.1 py311haf3dd0c_2 conda-forge
sip 6.7.11 py311hdf8f085_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
smpsite 1.0.0 dev_0
sniffio 1.3.0 pyhd8ed1ab_0 conda-forge
snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_0 conda-forge
soupsieve 2.5 pyhd8ed1ab_1 conda-forge
sphinx 5.0.2 pyh6c4a22f_0 conda-forge
sphinx-book-theme 1.0.1 pyhd8ed1ab_0 conda-forge
sphinx-comments 0.0.3 pyh9f0ad1d_0 conda-forge
sphinx-copybutton 0.5.2 pyhd8ed1ab_0 conda-forge
sphinx-design 0.3.0 pyhd8ed1ab_0 conda-forge
sphinx-external-toc 0.3.1 pyhd8ed1ab_1 conda-forge
sphinx-jupyterbook-latex 0.5.2 pyhd8ed1ab_0 conda-forge
sphinx-multitoc-numbering 0.1.3 pyhd8ed1ab_0 conda-forge
sphinx-thebe 0.2.1 pyhd8ed1ab_0 conda-forge
sphinx-togglebutton 0.3.2 pyhd8ed1ab_0 conda-forge
sphinxcontrib-applehelp 1.0.7 pyhd8ed1ab_0 conda-forge
sphinxcontrib-bibtex 2.5.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-devhelp 1.0.5 pyhd8ed1ab_0 conda-forge
sphinxcontrib-htmlhelp 2.0.4 pyhd8ed1ab_0 conda-forge
sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_0 conda-forge
sphinxcontrib-qthelp 1.0.6 pyhd8ed1ab_0 conda-forge
sphinxcontrib-serializinghtml 1.1.9 pyhd8ed1ab_0 conda-forge
sqlalchemy 2.0.20 py311h2725bcf_0 conda-forge
sqlite 3.43.0 h2b0dec6_0 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
statsmodels 0.14.0 py311h4a70a88_1 conda-forge
tabulate 0.9.0 pyhd8ed1ab_1 conda-forge
tblib 2.0.0 pyhd8ed1ab_0 conda-forge
terminado 0.17.1 pyhd1c38e8_0 conda-forge
threadpoolctl 3.2.0 pyha21a80b_0 conda-forge
tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge
tk 8.6.12 h5dbffcc_0 conda-forge
toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tornado 6.3.3 py311h2725bcf_0 conda-forge
tqdm 4.66.1 pyhd8ed1ab_0 conda-forge
traitlets 5.10.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.7.1 hd8ed1ab_0 conda-forge
typing_extensions 4.7.1 pyha770c72_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge
tzdata 2023c h71feb2d_0 conda-forge
uc-micro-py 1.0.1 pyhd8ed1ab_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_0 conda-forge
urllib3 2.0.4 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge
webcolors 1.13 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_2 conda-forge
websocket-client 1.6.3 pyhd8ed1ab_0 conda-forge
wheel 0.41.2 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.9 pyhd8ed1ab_0 conda-forge
wxpython 4.2.1 py311h7162ac5_0 conda-forge
xorg-libxau 1.0.11 h0dc2134_0 conda-forge
xorg-libxdmcp 1.1.3 h35c211d_0 conda-forge
xz 5.2.6 h775f41a_0 conda-forge
yaml 0.2.5 h0d85af4_2 conda-forge
zeromq 4.3.4 he49afe7_1 conda-forge
zict 3.0.0 pyhd8ed1ab_0 conda-forge
zipp 3.16.2 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h8a1eda9_5 conda-forge
zstd 1.5.5 h829000d_0 conda-forge