test.yml

name: run-tests

on:
   pull_request:
    branches:
      - main
   push:
    branches:
      - main
      
jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.9"]

    steps:
      - uses: actions/checkout@v3
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies manually
        run: |
          pip install future matplotlib cartopy pandas requests seaborn jupyter-book scikit-learn ipywidgets
          pip install pmagpy==4.2.106
          pip install -e ./smpsite
          pip install flake8 pytest pytest-cov
      - name: Lint with flake8
        run: |
          # stop the build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
      - name: Test with pytest
        run: |
          pytest smpsite --cov --cov-report=html:coverage_re
      - name: Upload coverage reports to Codecov
        uses: codecov/codecov-action@v3
        # with:
        #   directory: ./smpsite
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}