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config.json
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config.json
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{
"datadir" : "data",
"algs" : {"J48":"weka.classifiers.trees.J48","RandomTree":"weka.classifiers.trees.RandomTree","RandomForest":"weka.classifiers.trees.RandomForest","LibSVM":"weka.classifiers.functions.LibSVM","NaiveBayes":"weka.classifiers.bayes.NaiveBayes"},
"alg_for_classification":"LibSVM",
"training_sets": {
"All_Literature":["mfe","efe","centroidmfe","ensembledistance","freqmfestruct","ensemblediversity","lowcomplexity","lenWoUGA","lenWoUAG","lenWoUAA","length","nefe","mfei1","mfei2","mfei3","mfei4","tot_bases","n_stems","n_loops","dP","dG","diff","gccontent","aa","ac","ag","au","ca","cc","cg","cu","ga","gc","gg","gu","ua","uc","ug","uu","Q","normQ","D","normD","spectral_Ver","spectral_Stems","spectral_Junct","spectral_Endpts","spectral_Midpts","spectral_SecEigen","permuted_m_10_X_MFE","permuted_m_10_RMean_MFE","permuted_m_10_RSD_MFE","permuted_m_10_Z_MFE","permuted_m_10_P_MFE","permuted_m_10_P_Z_MFE","permuted_m_10_X_Q","permuted_m_10_RMean_Q","permuted_m_10_RSD_Q","permuted_m_10_Z_Q","permuted_m_10_P_Q","permuted_m_10_P_Z_Q","permuted_m_10_X_D","permuted_m_10_RMean_D","permuted_m_10_RSD_D","permuted_m_10_Z_D","permuted_m_10_P_D","permuted_m_10_P_Z_D","permuted_m_10_X_PB","permuted_m_10_RMean_PB","permuted_m_10_RSD_PB","permuted_m_10_Z_PB","permuted_m_10_P_PB","permuted_m_10_P_Z_PB","permuted_m_10_X_TD","permuted_m_10_RMean_TD","permuted_m_10_RSD_TD","permuted_m_10_Z_TD","permuted_m_10_P_TD","permuted_m_10_P_Z_TD","permuted_m_500_X_MFE","permuted_m_500_RMean_MFE","permuted_m_500_RSD_MFE","permuted_m_500_Z_MFE","permuted_m_500_P_MFE","permuted_m_500_P_Z_MFE","permuted_m_500_X_Q","permuted_m_500_RMean_Q","permuted_m_500_RSD_Q","permuted_m_500_Z_Q","permuted_m_500_P_Q","permuted_m_500_P_Z_Q","permuted_m_500_X_D","permuted_m_500_RMean_D","permuted_m_500_RSD_D","permuted_m_500_Z_D","permuted_m_500_P_D","permuted_m_500_P_Z_D","permuted_m_500_X_PB","permuted_m_500_RMean_PB","permuted_m_500_RSD_PB","permuted_m_500_Z_PB","permuted_m_500_P_PB","permuted_m_500_P_Z_PB","permuted_m_500_X_TD","permuted_m_500_RMean_TD","permuted_m_500_RSD_TD","permuted_m_500_Z_TD","permuted_m_500_P_TD","permuted_m_500_P_Z_TD","permuted_d_10_X_MFE","permuted_d_10_RMean_MFE","permuted_d_10_RSD_MFE","permuted_d_10_Z_MFE","permuted_d_10_P_MFE","permuted_d_10_P_Z_MFE","permuted_d_10_X_Q","permuted_d_10_RMean_Q","permuted_d_10_RSD_Q","permuted_d_10_Z_Q","permuted_d_10_P_Q","permuted_d_10_P_Z_Q","permuted_d_10_X_D","permuted_d_10_RMean_D","permuted_d_10_RSD_D","permuted_d_10_Z_D","permuted_d_10_P_D","permuted_d_10_P_Z_D","permuted_d_10_X_PB","permuted_d_10_RMean_PB","permuted_d_10_RSD_PB","permuted_d_10_Z_PB","permuted_d_10_P_PB","permuted_d_10_P_Z_PB","permuted_d_10_X_TD","permuted_d_10_RMean_TD","permuted_d_10_RSD_TD","permuted_d_10_Z_TD","permuted_d_10_P_TD","permuted_d_10_P_Z_TD","permuted_d_500_X_MFE","permuted_d_500_RMean_MFE","permuted_d_500_RSD_MFE","permuted_d_500_Z_MFE","permuted_d_500_P_MFE","permuted_d_500_P_Z_MFE","permuted_d_500_X_Q","permuted_d_500_RMean_Q","permuted_d_500_RSD_Q","permuted_d_500_Z_Q","permuted_d_500_P_Q","permuted_d_500_P_Z_Q","permuted_d_500_X_D","permuted_d_500_RMean_D","permuted_d_500_RSD_D","permuted_d_500_Z_D","permuted_d_500_P_D","permuted_d_500_P_Z_D","permuted_d_500_X_PB","permuted_d_500_RMean_PB","permuted_d_500_RSD_PB","permuted_d_500_Z_PB","permuted_d_500_P_PB","permuted_d_500_P_Z_PB","permuted_d_500_X_TD","permuted_d_500_RMean_TD","permuted_d_500_RSD_TD","permuted_d_500_Z_TD","permuted_d_500_P_TD","permuted_d_500_P_Z_TD","permuted_z_10_X_MFE","permuted_z_10_RMean_MFE","permuted_z_10_RSD_MFE","permuted_z_10_Z_MFE","permuted_z_10_P_MFE","permuted_z_10_P_Z_MFE","permuted_z_10_X_Q","permuted_z_10_RMean_Q","permuted_z_10_RSD_Q","permuted_z_10_Z_Q","permuted_z_10_P_Q","permuted_z_10_P_Z_Q","permuted_z_10_X_D","permuted_z_10_RMean_D","permuted_z_10_RSD_D","permuted_z_10_Z_D","permuted_z_10_P_D","permuted_z_10_P_Z_D","permuted_z_10_X_PB","permuted_z_10_RMean_PB","permuted_z_10_RSD_PB","permuted_z_10_Z_PB","permuted_z_10_P_PB","permuted_z_10_P_Z_PB","permuted_z_10_X_TD","permuted_z_10_RMean_TD","permuted_z_10_RSD_TD","permuted_z_10_Z_TD","permuted_z_10_P_TD","permuted_z_10_P_Z_TD","permuted_z_500_X_MFE","permuted_z_500_RMean_MFE","permuted_z_500_RSD_MFE","permuted_z_500_Z_MFE","permuted_z_500_P_MFE","permuted_z_500_P_Z_MFE","permuted_z_500_X_Q","permuted_z_500_RMean_Q","permuted_z_500_RSD_Q","permuted_z_500_Z_Q","permuted_z_500_P_Q","permuted_z_500_P_Z_Q","permuted_z_500_X_D","permuted_z_500_RMean_D","permuted_z_500_RSD_D","permuted_z_500_Z_D","permuted_z_500_P_D","permuted_z_500_P_Z_D","permuted_z_500_X_PB","permuted_z_500_RMean_PB","permuted_z_500_RSD_PB","permuted_z_500_Z_PB","permuted_z_500_P_PB","permuted_z_500_P_Z_PB","permuted_z_500_X_TD","permuted_z_500_RMean_TD","permuted_z_500_RSD_TD","permuted_z_500_Z_TD","permuted_z_500_P_TD","permuted_z_500_P_Z_TD","permuted_f_10_X_MFE","permuted_f_10_RMean_MFE","permuted_f_10_RSD_MFE","permuted_f_10_Z_MFE","permuted_f_10_P_MFE","permuted_f_10_P_Z_MFE","permuted_f_10_X_Q","permuted_f_10_RMean_Q","permuted_f_10_RSD_Q","permuted_f_10_Z_Q","permuted_f_10_P_Q","permuted_f_10_P_Z_Q","permuted_f_10_X_D","permuted_f_10_RMean_D","permuted_f_10_RSD_D","permuted_f_10_Z_D","permuted_f_10_P_D","permuted_f_10_P_Z_D","permuted_f_10_X_PB","permuted_f_10_RMean_PB","permuted_f_10_RSD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"All_Linear":["permuted_z_10_RSD_PB","permuted_f_10_RSD_PB","uu","gccontent","permuted_z_500_RMean_MFE","permuted_m_10_RSD_PB","ua","permuted_d_10_RSD_PB","permuted_z_500_RSD_PB","gu","ug","ac","ca","diff","spectral_Stems","permuted_m_10_Z_TD","permuted_z_500_Z_PB","permuted_d_10_Z_TD","permuted_z_10_Z_TD","permuted_f_10_Z_TD","permuted_f_500_Z_TD","cu","uc","ag","ga","nefe","permuted_z_500_Z_MFE","permuted_z_10_Z_Q","permuted_z_500_P_MFE","mfei2","dP","spectral_Endpts","permuted_m_10_RSD_MFE","lenWoUAG","permuted_f_10_RSD_MFE","permuted_z_500_RSD_MFE","gg","cg","gc","lenWoUAA","permuted_z_10_RSD_MFE","lowcomplexity","lenWoUGA","permuted_d_10_RSD_MFE","permuted_d_10_RSD_TD","permuted_m_10_RSD_TD","permuted_m_500_RSD_TD","permuted_m_10_RSD_D","permuted_d_500_RSD_TD","permuted_z_10_RSD_D","permuted_d_10_RSD_Q","permuted_f_10_RSD_D","permuted_f_500_RSD_TD","permuted_z_500_RSD_TD","permuted_d_500_X_TD","permuted_z_500_RMean_PB","length","permuted_z_10_RSD_TD","permuted_f_10_RSD_TD"],
"Bor_Confirmed":["mfe","efe","centroidmfe","freqmfestruct","lenWoUGA","lenWoUAG","lenWoUAA","length","nefe","mfei1","mfei2","mfei3","mfei4","tot_bases","n_stems","n_loops","dG","diff","gccontent","au","ca","cc","cg","cu","gc","gg","gu","ua","uu","Q","normQ","spectral_Ver","spectral_Stems","spectral_Midpts","spectral_SecEigen","permuted_m_10_X_MFE","permuted_m_10_RMean_MFE","permuted_m_10_Z_MFE","permuted_m_10_P_MFE","permuted_m_10_X_Q","permuted_m_10_RMean_Q","permuted_m_10_RMean_D","permuted_m_10_Z_D","permuted_m_10_X_PB","permuted_m_10_RMean_PB","permuted_m_10_Z_PB","permuted_m_10_P_PB","permuted_m_10_X_TD","permuted_m_10_RMean_TD","permuted_m_10_Z_TD","permuted_m_500_X_MFE","permuted_m_500_RMean_MFE","permuted_m_500_RSD_MFE","permuted_m_500_Z_MFE","permuted_m_500_P_MFE","permuted_m_500_X_Q","permuted_m_500_RMean_Q","permuted_m_500_RSD_Q","permuted_m_500_Z_Q","permuted_m_500_P_Q","permuted_m_500_RMean_D","permuted_m_500_RSD_D","permuted_m_500_X_PB","permuted_m_500_RMean_PB","permuted_m_500_RSD_PB","permuted_m_500_Z_PB","permuted_m_500_P_PB","permuted_m_500_X_TD","permuted_m_500_RMean_TD","permuted_m_500_Z_TD","permuted_m_500_P_TD","permuted_d_10_X_MFE","permuted_d_10_RMean_MFE","permuted_d_10_Z_MFE","permuted_d_10_P_MFE","permuted_d_10_RMean_Q","permuted_d_10_RSD_Q","permuted_d_10_RMean_D","permuted_d_10_Z_D","permuted_d_10_X_PB","permuted_d_10_RMean_PB","permuted_d_10_Z_PB","permuted_d_10_P_PB","permuted_d_10_X_TD","permuted_d_10_RMean_TD","permuted_d_500_X_MFE","permuted_d_500_RMean_MFE","permuted_d_500_RSD_MFE","permuted_d_500_Z_MFE","permuted_d_500_P_MFE","permuted_d_500_RMean_Q","permuted_d_500_RSD_Q","permuted_d_500_RMean_D","permuted_d_500_RSD_D","permuted_d_500_X_PB","permuted_d_500_RMean_PB","permuted_d_500_RSD_PB","permuted_d_500_Z_PB","permuted_d_500_P_PB","permuted_d_500_X_TD","permuted_d_500_RMean_TD","permuted_d_500_RSD_TD","permuted_d_500_Z_TD","permuted_d_500_P_TD","permuted_z_10_X_MFE","permuted_z_10_RMean_MFE","permuted_z_10_Z_MFE","permuted_z_10_P_MFE","permuted_z_10_RMean_Q","permuted_z_10_RMean_D","permuted_z_10_RSD_D","permuted_z_10_Z_D","permuted_z_10_X_PB","permuted_z_10_RMean_PB","permuted_z_10_Z_PB","permuted_z_10_P_PB","permuted_z_10_X_TD","permuted_z_10_RMean_TD","permuted_z_10_Z_TD","permuted_z_500_X_MFE","permuted_z_500_RMean_MFE","permuted_z_500_RSD_MFE","permuted_z_500_Z_MFE","permuted_z_500_P_MFE","permuted_z_500_X_Q","permuted_z_500_RMean_Q","permuted_z_500_RSD_Q","permuted_z_500_P_Q","permuted_z_500_RMean_D","permuted_z_500_RSD_D","permuted_z_500_X_PB","permuted_z_500_RMean_PB","permuted_z_500_RSD_PB","permuted_z_500_Z_PB","permuted_z_500_P_PB","permuted_z_500_X_TD","permuted_z_500_RMean_TD","permuted_z_500_Z_TD","permuted_z_500_P_TD","permuted_f_10_X_MFE","permuted_f_10_RMean_MFE","permuted_f_10_Z_MFE","permuted_f_10_P_MFE","permuted_f_10_Z_Q","permuted_f_10_Z_D","permuted_f_10_X_PB","permuted_f_10_RMean_PB","permuted_f_10_Z_PB","permuted_f_10_P_PB","permuted_f_10_X_TD","permuted_f_10_RMean_TD","permuted_f_500_X_MFE","permuted_f_500_RMean_MFE","permuted_f_500_RSD_MFE","permuted_f_500_Z_MFE","permuted_f_500_P_MFE","permuted_f_500_RMean_Q","permuted_f_500_RSD_Q","permuted_f_500_P_Q","permuted_f_500_RMean_D","permuted_f_500_RSD_D","permuted_f_500_X_PB","permuted_f_500_RMean_PB","permuted_f_500_RSD_PB","permuted_f_500_Z_PB","permuted_f_500_P_PB","permuted_f_500_X_TD","permuted_f_500_RMean_TD","permuted_f_500_Z_TD","permuted_f_500_P_TD"],
"Weka_Confirmed": ["permuted_z_500_Z_MFE","permuted_m_500_Z_MFE","mfei2","mfei1","permuted_z_500_P_MFE","nefe","tot_bases","permuted_d_500_Z_MFE","permuted_m_500_P_MFE","gc","permuted_d_10_Z_MFE","permuted_m_500_RSD_MFE","dG","efe","spectral_SecEigen","permuted_f_500_Z_MFE","dP","diff","permuted_f_500_X_MFE","permuted_d_10_RSD_PB","ua","permuted_f_10_X_MFE","permuted_m_10_RSD_Q","permuted_z_500_RSD_MFE","gccontent","permuted_z_500_X_MFE","au","ag","lenWoUAA","permuted_m_500_RSD_D","permuted_z_10_X_MFE","permuted_d_500_X_MFE","permuted_m_10_P_MFE","permuted_m_10_Z_MFE","permuted_d_10_X_MFE","uu","ac","permuted_z_10_X_TD","ga","centroidmfe","ca","permuted_f_500_RMean_PB","permuted_z_500_X_TD","permuted_m_500_X_MFE","permuted_m_10_Z_D","permuted_m_10_X_MFE","cc","permuted_d_10_RSD_D","permuted_z_10_Z_TD","mfe","permuted_f_10_Z_D","length","permuted_f_500_Z_D","permuted_f_10_Z_MFE","permuted_z_10_RSD_TD","ensembledistance","permuted_m_10_Z_PB","permuted_z_500_RSD_TD","permuted_f_10_X_TD","mfei4","lenWoUAG","permuted_m_10_RMean_TD","spectral_Endpts","permuted_d_10_RMean_TD","freqmfestruct","permuted_f_500_P_PB","permuted_z_10_RMean_TD","spectral_Junct","permuted_d_500_RMean_Q","permuted_m_500_P_Q","permuted_m_500_P_PB","permuted_f_10_RSD_PB","lenWoUGA","permuted_d_500_RMean_PB","permuted_f_500_X_TD","permuted_m_500_P_D","permuted_d_10_Z_D","permuted_f_10_Z_Q","permuted_f_500_RMean_MFE","permuted_f_500_Z_Q","permuted_f_500_Z_PB","permuted_d_500_RSD_MFE","permuted_z_500_RSD_D","permuted_m_500_RSD_Q","permuted_z_10_Z_MFE","permuted_m_500_RMean_Q","permuted_d_500_RMean_D","permuted_f_10_RMean_PB","permuted_d_10_P_PB"],
"Bor_Linear":["uu","permuted_z_500_RMean_MFE","gccontent","permuted_z_500_RSD_PB","ua","lenWoUGA","ca","gu","diff","spectral_Stems","permuted_z_500_Z_PB","permuted_m_10_Z_TD","permuted_z_10_Z_TD","permuted_f_500_Z_TD","mfei2","tot_bases","normQ","permuted_z_500_P_MFE","nefe","permuted_z_500_Z_MFE","lenWoUAG","lenWoUAA","gg","permuted_z_500_RSD_MFE","cg","gc","cu","permuted_z_10_RSD_D","permuted_z_500_RMean_PB","permuted_d_500_RSD_TD","permuted_d_10_RSD_Q","permuted_m_500_X_TD","length"],
},
"_unused_sets":{"No_Permutation":["mfe","efe","centroidmfe","ensembledistance","freqmfestruct","ensemblediversity","lowcomplexity","lenWoUGA","lenWoUAG","lenWoUAA","length","nefe","mfei1","mfei2","mfei3","mfei4","tot_bases","n_stems","n_loops","dP","dG","diff","gccontent","aa","ac","ag","au","ca","cc","cg","cu","ga","gc","gg","gu","ua","uc","ug","uu","Q","normQ","D","normD","spectral_Ver","spectral_Stems","spectral_Junct","spectral_Endpts","spectral_Midpts","spectral_SecEigen"],
"Weka_Confirmed_and_custom": ["nefe_div_gccon","nefe_times_dP","nefe_times_dP_div_gccon","ua_div_gccon","permuted_z_500_Z_MFE","permuted_m_500_Z_MFE","mfei2","mfei1","permuted_z_500_P_MFE","nefe","tot_bases","permuted_d_500_Z_MFE","permuted_m_500_P_MFE","gc","permuted_d_10_Z_MFE","permuted_m_500_RSD_MFE","dG","efe","spectral_SecEigen","permuted_f_500_Z_MFE","dP","diff","permuted_f_500_X_MFE","permuted_d_10_RSD_PB","ua","permuted_f_10_X_MFE","permuted_m_10_RSD_Q","permuted_z_500_RSD_MFE","gccontent","permuted_z_500_X_MFE","au","ag","lenWoUAA","permuted_m_500_RSD_D","permuted_z_10_X_MFE","permuted_d_500_X_MFE","permuted_m_10_P_MFE","permuted_m_10_Z_MFE","permuted_d_10_X_MFE","uu","ac","permuted_z_10_X_TD","ga","centroidmfe","ca","permuted_f_500_RMean_PB","permuted_z_500_X_TD","permuted_m_500_X_MFE","permuted_m_10_Z_D","permuted_m_10_X_MFE","cc","permuted_d_10_RSD_D","permuted_z_10_Z_TD","mfe","permuted_f_10_Z_D","length","permuted_f_500_Z_D","permuted_f_10_Z_MFE","permuted_z_10_RSD_TD","ensembledistance","permuted_m_10_Z_PB","permuted_z_500_RSD_TD","permuted_f_10_X_TD","mfei4","lenWoUAG","permuted_m_10_RMean_TD","spectral_Endpts","permuted_d_10_RMean_TD","freqmfestruct","permuted_f_500_P_PB","permuted_z_10_RMean_TD","spectral_Junct","permuted_d_500_RMean_Q","permuted_m_500_P_Q","permuted_m_500_P_PB","permuted_f_10_RSD_PB","lenWoUGA","permuted_d_500_RMean_PB","permuted_f_500_X_TD","permuted_m_500_P_D","permuted_d_10_Z_D","permuted_f_10_Z_Q","permuted_f_500_RMean_MFE","permuted_f_500_Z_Q","permuted_f_500_Z_PB","permuted_d_500_RSD_MFE","permuted_z_500_RSD_D","permuted_m_500_RSD_Q","permuted_z_10_Z_MFE","permuted_m_500_RMean_Q","permuted_d_500_RMean_D","permuted_f_10_RMean_PB","permuted_d_10_P_PB"],
"handpick": ["permuted_z_500_Z_MFE","mfei2","mfei1","nefe","centroidmfe","tot_bases","permuted_m_500_RSD_MFE","spectral_SecEigen","permuted_m_10_RSD_Q","lenWoUAA","permuted_z_10_X_TD","ua","spectral_Endpts","ac","permuted_f_500_RMean_MFE"],
"handpick_plus": ["nefe_div_gccon","nefe_times_dP","nefe_times_dP_div_gccon","ua_div_gccon","permuted_z_500_Z_MFE","mfei2","mfei1","nefe","centroidmfe","tot_bases","permuted_m_500_RSD_MFE","spectral_SecEigen","permuted_m_10_RSD_Q","lenWoUAA","permuted_z_10_X_TD","ua","spectral_Endpts","ac","permuted_f_500_RMean_MFE"],
},
"training_set_for_classification":"All_Literature",
"set_labels": ["Literatur Features","Literatur + Clustering","Boruta","WEKA SVMeval","Brouta + Clustering"],
"splits" : 30,
"benchcount": 5
}