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config.yaml
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config.yaml
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baseURL: https://openms.de/
languageCode: en-us
theme: scientific-python-hugo-theme
disableKinds: ["taxonomy", "term"]
googleAnalytics: UA-162151853-1
DefaultContentLanguage: en
markup:
goldmark:
renderer:
unsafe: true
highlight:
guessSyntax: true
# Uncomment this to disable the translations for the specified languages.
# This may be useful to be able to merge partial translations without deploying
# them to openms.de immediately.
disableLanguages: []
params:
images:
- /images/logo.svg
navColor: blue
plausible:
dataDomain: openms.de
languages:
en:
title: OpenMS
weight: 1
contentDir: content/en
languageName: English
params:
description: Why OpenMS? Mass Spectrometry. Visualizations. Open source.
navbarlogo:
image: openms-logo.png
link: /
hero:
# Main hero title
# title: OpenMS
# Hero subtitle (optional)
subtitle: The open-source framework for Mass Spectrometry
# Button text
buttontext: Get started
# Where the main hero button links to
buttonlink: https://openms.readthedocs.io/en/latest/about/installation.html
# Hero image (from static/images/___)
image: openms-logo.png
heroGroup:
- title: "OpenMS allows users to:"
bgColor: ECF2F9
heroItems:
- title: Run existing workflows
subtitle: Run existing workflows for proteomics and metabolomics with OpenMS in KNIME.
leftAlign: true
image: knime-analytics.png
buttonText: Get Started
buttonLink: "https://openms.readthedocs.io/en/latest/getting-started/knime-get-started.html"
- title: Create your own workflows
subtitle: Modify and create your own OpenMS workflows in Galaxy, KNIME and Nextflow.
image: knime-edit.png
buttonText: Get Started
buttonLink: "https://openms.readthedocs.io/en/latest/getting-started/workflows.html"
- title: Use OpenMS in Python
subtitle: Enhance workflows with pyOpenMS scripts or develop novel methods using pyOpenMS
leftAlign: true
image: pyopenms-logo.png
imgClass: img-fit
bottomBorderRadius: true
buttonText: Get Started
buttonLink: "https://pyopenms.readthedocs.io/en/latest/"
- title: "Advanced users / developers can use OpenMS to:"
bgColor: FFF1E0
heroItems:
- title: Analyze large datasets
subtitle: Run workflows on very large datasets on powerful compute infrastructure
leftAlign: true
imgClass: img-fit
image: nf-core-logo.png
buttonText: Get Started
buttonLink: "https://openms.readthedocs.io/en/latest/getting-started/nextflow-get-started.html"
- title: Create high-performance tools
subtitle: Develop high-performance tools or algorithms with the C++ OpenMS library
terminal: true
buttonText: Get Started
bottomBorderRadius: true
buttonLink: "https://abibuilder.cs.uni-tuebingen.de/archive/openms/Documentation/nightly/html/OpenMS_tutorial.html"
keyfeatures:
title: What is OpenMS ?
subtitle: OpenMS offers an open-source C++ library (+ Python bindings) for LC/MS data management, analysis and visualization. It empowers rapid development of mass spectrometry related software. OpenMS is freely available under the three clause BSD license and runs under Windows, macOS and Linux. The OpenMS members have a strong commitment to creating an open, inclusive, and positive community. Please read the OpenMS Code of Conduct for guidance on how to interact with others in a way that makes the community thrive.
features:
- title: Proteomics
text: Almost 200 ready-made and customisable tools for analysing your proteomics data. Combined in flexible workflows they provide solutions to a broad range of problems arising in proteomics labs.
img: /images/content_images/keyfeatures/proteomics2.png
url: /keyfeatures/proteomics
- title: Metabolomics
text: OpenMS provides a wide range of customisable tools, specifically designed for all steps in the analysis of your targeted and untargeted metabolomics data.
img: /images/content_images/keyfeatures/metabolomics4.png
url: /keyfeatures/metabolomics
- title: Workflows
text: Every tool that is developed within OpenMS is available on flexible, scalable and easy-to-use workflow engines (such as KNIME, Galaxy, and nextflow) facilitating reproducible science.
img: /images/content_images/keyfeatures/workflows2.png
url: https://openms.readthedocs.io/en/latest/getting-started/workflows.html
webapps:
- index: 0
url: https://abi-services.cs.uni-tuebingen.de/umetaflow/
logo: /images/webapp/logo/umetaflow-logo.png
description: This app offers the powerful UmetaFlow pipeline for untargeted metabolomics in an accessible user interface.
- index: 1
url: https://abi-services.cs.uni-tuebingen.de/nuxl/
logo: /images/webapp/logo/NuXL_logo.png
description: NuXL is a dedicated software package designed for the analysis of XL-MS (cross-linking mass spectrometry)...<br>
- index: 2
logo: /images/webapp/logo/naseweis.png
url: https://abi-services.cs.uni-tuebingen.de/naseweis/
description: NASEWEIS is webapp version of the NucleicAcidSearch<br>Engine, it is a tool to do library searching of Oligonucleotide
- index: 3
url: https://abi-services.cs.uni-tuebingen.de/flashtaggerviewer/
logo: /images/webapp/logo/FLASH_TnT.png
description: FLASHTaggerviewer visualize output from FLASH* tools. FLASH* tools can deconvolute your Topdown data very...
- index: 4
url: https://abi-services.cs.uni-tuebingen.de/umetaflow/
logo: /images/webapp/logo/umetaflow-logo.png
description: This app offers the powerful UmetaFlow pipeline for untargeted metabolomics in an accessible user interface.
- index: 5
url: https://abi-services.cs.uni-tuebingen.de/nuxl/
logo: /images/webapp/logo/NuXL_logo.png
description: NuXL is a dedicated software package designed for the analysis of XL-MS (cross-linking mass spectrometry)...
- index: 6
url: https://abi-services.cs.uni-tuebingen.de/naseweis/
logo: /images/webapp/logo/naseweis.png
description: NASEWEIS is webapp version<br>of the NucleicAcidSearch<br>Engine, it is a tool to do library searching of...
- index: 7
url: https://abi-services.cs.uni-tuebingen.de/flashtaggerviewer/
logo: /images/webapp/logo/FLASH_TnT.png
description: FLASHTaggerviewer visualize output from FLASH* tools. FLASH* tools can deconvolute your Topdown data very...
section5: false
footer:
title: OpenMS
deployedBy: /images/deployed-by-netlify.png
logo:
socialmediatitle: ""
socialmedia:
- link: https://github.com/OpenMS/OpenMS
icon: github
- link: https://twitter.com/OpenMSTeam
icon: twitter
quicklinks:
column1:
links:
- text: Install
link: https://openms.readthedocs.io/en/latest/about/installation.html
- text: Documentation
link: https://openms.readthedocs.io/en/latest/
- text: Citing OpenMS
link: /citing-openms
column2:
links:
- text: Community
link: /communication
- text: Contribute
link: /contribute
- text: Code of conduct
link: /code-of-conduct
column3:
links:
- text: About us
link: /about
- text: Help
link: /help
- text: Jobs
link: /jobs
column4:
links:
- text: Terms of use
link: /terms
- text: Privacy
link: /privacy
- text: Press kit
link: /press-kit
- text: Impressum
link: /impressum
navbar:
- title: News
url: /news
- title: Install
url: https://openms.readthedocs.io/en/latest/about/installation.html
- title: Documentation
url: https://openms.readthedocs.io/en/latest/index.html
- title: Community
sublinks:
- title: Communication
url: /communication
- title: Contribute
url: /contribute
- title: Awards
url: /news/fellowship2024
url: /community
- title: About Us
sublinks:
- title: OpenMS Project
url: /about
- title: Contributors
url: /contributors
url: /about
- title: Use Cases
url: /publications
sublinks:
- title: Applications
url: /applications
- title: Publications
url: /publications
- title: Help Request
url: /help-request
button: true