From 27c9a0472672d8637a9ac315dfa7c20835b4965d Mon Sep 17 00:00:00 2001
From: Geoff Hutchison <geoff.hutchison@gmail.com>
Date: Thu, 31 Aug 2023 23:27:30 -0400
Subject: [PATCH] Fix #1317 - editor wasn't using the format specification for
 parsing

Signed-off-by: Geoff Hutchison <geoff.hutchison@gmail.com>
---
 .../coordinateeditor/coordinateeditordialog.cpp   | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp b/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp
index 8aa4103eb..96b76c368 100644
--- a/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp
+++ b/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp
@@ -385,6 +385,17 @@ void CoordinateEditorDialog::validateInputWorker()
           break;
         }
 
+        case '#': {
+          // Validate integer:
+          bool isInt;
+          int index = tokenCursor.selectedText().toInt(&isInt);
+          if (!isInt)
+            m_ui->text->markInvalid(tokenCursor, tr("Invalid atomic index."));
+          else
+            m_ui->text->markValid(tokenCursor, tr("Atomic index."));
+          break;
+        }
+
         case 'Z': {
           // Validate integer:
           bool isInt;
@@ -564,6 +575,7 @@ void CoordinateEditorDialog::applyFinish(bool valid)
                                                  newMolecule.atomPositions3d());
   } else {
     newMolecule.perceiveBondsSimple();
+    newMolecule.perceiveBondOrders();
   }
 
   m_ui->text->document()->setModified(false);
@@ -625,6 +637,9 @@ QString CoordinateEditorDialog::detectInputFormat() const
   if (m_ui->text->document()->isEmpty())
     return QString();
 
+  if (!m_ui->spec->text().isEmpty())
+    return m_ui->spec->text();
+
   // Extract the first non-empty line of text from the document.
   QTextCursor cur(m_ui->text->document());
   QString sample;