From 264734eba53e1bb5f146dd759ad826dced257729 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 11 Jun 2024 22:06:56 +0300 Subject: [PATCH 1/4] Update maxo.yml, switching maxo to GitHub release PURLs We moved MAxO to using GitHub releases instead of raw.github locations for the release files. This is always a painful process, as you have cannot have two conflicting wildcard based rewrite rules in nginx, so all have to be done manually. I added a test for all of them. --- config/maxo.yml | 332 +++++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 327 insertions(+), 5 deletions(-) diff --git a/config/maxo.yml b/config/maxo.yml index 8a2e31fc..0bf4f105 100644 --- a/config/maxo.yml +++ b/config/maxo.yml @@ -4,9 +4,9 @@ idspace: MAXO base_url: /obo/maxo products: -- maxo.owl: https://raw.githubusercontent.com/monarch-initiative/MAxO/master/maxo.owl -- maxo.obo: https://raw.githubusercontent.com/monarch-initiative/MAxO/master/maxo.obo -- maxo.json: https://raw.githubusercontent.com/monarch-initiative/MAxO/master/maxo.json +- maxo.owl: https://github.com/monarch-initiative/MAxO/releases/latest/download/maxo.owl +- maxo.obo: https://github.com/monarch-initiative/MAxO/releases/latest/download/maxo.obo +- maxo.json: https://github.com/monarch-initiative/MAxO/releases/latest/download/maxo.json term_browser: ontobee example_terms: @@ -14,8 +14,330 @@ example_terms: entries: +- prefix: /releases/2024-05-24/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2024-05-24/ + tests: + - from: /releases/2024-05-24/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-05-24/ + - from: /releases/2024-05-24/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-05-24/maxo.obo + +- prefix: /releases/2024-02-05/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2024-02-05/ + tests: + - from: /releases/2024-02-05/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-02-05/ + - from: /releases/2024-02-05/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-02-05/maxo.obo + +- prefix: /releases/2023-12-01/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-12-01/ + tests: + - from: /releases/2023-12-01/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-12-01/ + - from: /releases/2023-12-01/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-12-01/maxo.obo + +- prefix: /releases/2023-10-03/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-10-03/ + tests: + - from: /releases/2023-10-03/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-10-03/ + - from: /releases/2023-10-03/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-10-03/maxo.obo + +- prefix: /releases/2023-06-06/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-06-06/ + tests: + - from: /releases/2023-06-06/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-06-06/ + - from: /releases/2023-06-06/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-06-06/maxo.obo + +- prefix: /releases/2023-05-17/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-05-17/ + tests: + - from: /releases/2023-05-17/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-17/ + - from: /releases/2023-05-17/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-17/maxo.obo + +- prefix: /releases/2023-05-16/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-05-16/ + tests: + - from: /releases/2023-05-16/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-16/ + - from: /releases/2023-05-16/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-16/maxo.obo + +- prefix: /releases/2023-05-02/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-05-02/ + tests: + - from: /releases/2023-05-02/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-02/ + - from: /releases/2023-05-02/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-02/maxo.obo + +- prefix: /releases/2023-04-18/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-04-18/ + tests: + - from: /releases/2023-04-18/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-04-18/ + - from: /releases/2023-04-18/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-04-18/maxo.obo + +- prefix: /releases/2023-04-13/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-04-13/ + tests: + - from: /releases/2023-04-13/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-04-13/ + - from: /releases/2023-04-13/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-04-13/maxo.obo + +- prefix: /releases/2023-03-09/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-03-09/ + tests: + - from: /releases/2023-03-09/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-03-09/ + - from: /releases/2023-03-09/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-03-09/maxo.obo + +- prefix: /releases/2023-02-20/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-02-20/ + tests: + - from: /releases/2023-02-20/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-20/ + - from: /releases/2023-02-20/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-20/maxo.obo + +- prefix: /releases/2023-02-19/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-02-19/ + tests: + - from: /releases/2023-02-19/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-19/ + - from: /releases/2023-02-19/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-19/maxo.obo + +- prefix: /releases/2023-02-17/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-02-17/ + tests: + - from: /releases/2023-02-17/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-17/ + - from: /releases/2023-02-17/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-17/maxo.obo + +- prefix: /releases/2022-12-19/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-12-19/ + tests: + - from: /releases/2022-12-19/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-12-19/ + - from: /releases/2022-12-19/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-12-19/maxo.obo + +- prefix: /releases/2022-12-09/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-12-09/ + tests: + - from: /releases/2022-12-09/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-12-09/ + - from: /releases/2022-12-09/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-12-09/maxo.obo + +- prefix: /releases/2022-11-22/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-11-22/ + tests: + - from: /releases/2022-11-22/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-11-22/ + - from: /releases/2022-11-22/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-11-22/maxo.obo + +- prefix: /releases/2022-11-14/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-11-14/ + tests: + - from: /releases/2022-11-14/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-11-14/ + - from: /releases/2022-11-14/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-11-14/maxo.obo + +- prefix: /releases/2022-08-31/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-08-31/ + tests: + - from: /releases/2022-08-31/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-08-31/ + - from: /releases/2022-08-31/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-08-31/maxo.obo + +- prefix: /releases/2022-06-24/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-06-24/ + tests: + - from: /releases/2022-06-24/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-06-24/ + - from: /releases/2022-06-24/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-06-24/maxo.obo + +- prefix: /releases/2022-05-03/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-05-03/ + tests: + - from: /releases/2022-05-03/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-05-03/ + - from: /releases/2022-05-03/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-05-03/maxo.obo + +- prefix: /releases/2022-03-31/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-03-31/ + tests: + - from: /releases/2022-03-31/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-03-31/ + - from: /releases/2022-03-31/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-03-31/maxo.obo + +- prefix: /releases/2021-09-03/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-09-03/ + tests: + - from: /releases/2021-09-03/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-09-03/ + - from: /releases/2021-09-03/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-09-03/maxo.obo + +- prefix: /releases/2021-08-16/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-08-16/ + tests: + - from: /releases/2021-08-16/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-08-16/ + - from: /releases/2021-08-16/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-08-16/maxo.obo + +- prefix: /releases/2021-06-28/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-06-28/ + tests: + - from: /releases/2021-06-28/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-06-28/ + - from: /releases/2021-06-28/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-06-28/maxo.obo + +- prefix: /releases/2021-03-22/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-03-22/ + tests: + - from: /releases/2021-03-22/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-03-22/ + - from: /releases/2021-03-22/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-03-22/maxo.obo + +2021-02-23 +- prefix: /releases/2021-02-09/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-02-09/ + tests: + - from: /releases/2021-02-09/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-02-09/ + - from: /releases/2021-02-09/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-02-09/maxo.obo + +- prefix: /releases/2020-12-10/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-12-10/ + tests: + - from: /releases/2020-12-10/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-10/ + - from: /releases/2020-12-10/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-10/maxo.obo + +- prefix: /releases/2020-12-07/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-12-07/ + tests: + - from: /releases/2020-12-07/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-07/ + - from: /releases/2020-12-07/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-07/maxo.obo + +- prefix: /releases/2020-11-16/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-11-16/ + tests: + - from: /releases/2020-11-16/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-11-16/ + - from: /releases/2020-11-16/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-11-16/maxo.obo + +- prefix: /releases/2020-07-14/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-07-14/ + tests: + - from: /releases/2020-07-14/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-07-14/ + - from: /releases/2020-07-14/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-07-14/maxo.obo + +- prefix: /releases/2020-06-25/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-06-25/ + tests: + - from: /releases/2020-06-25/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-25/ + - from: /releases/2020-06-25/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-25/maxo.obo + +- prefix: /releases/2020-06-12/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-06-12/ + tests: + - from: /releases/2020-06-12/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-12/ + - from: /releases/2020-06-12/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-12/maxo.obo + +- prefix: /releases/2020-05-13/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-05-13/ + tests: + - from: /releases/2020-05-13/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-05-13/ + - from: /releases/2020-05-13/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-05-13/maxo.obo + +- prefix: /releases/2020-04-14/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-04-14/ + tests: + - from: /releases/2020-04-14/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-04-14/ + - from: /releases/2020-04-14/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-04-14/maxo.obo + +- prefix: /releases/2020-02-10/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-02-10/ + tests: + - from: /releases/2020-02-10/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-02-10/ + - from: /releases/2020-02-10/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-02-10/maxo.obo + +- prefix: /releases/2020-01-29/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-01-29/ + tests: + - from: /releases/2020-01-29/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-29/ + - from: /releases/2020-01-29/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-29/maxo.obo + +- prefix: /releases/2020-01-16/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-01-16/ + tests: + - from: /releases/2020-01-16/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-16/ + - from: /releases/2020-01-16/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-16/maxo.obo + +- prefix: /releases/2019-11-22/ + replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2019-11-22/ + tests: + - from: /releases/2019-11-22/ + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2019-11-22/ + - from: /releases/2019-11-22/uberon.obo + to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2019-11-22/maxo.obo + - prefix: /releases/ - replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v + replacement: https://github.com/monarch-initiative/MAxO/releases/download/v + tests: + - from: /releases/2024-05-24/maxo.obo + to: https://github.com/monarch-initiative/MAxO/releases/download/v2024-05-24/maxo.obo + +- prefix: /imports/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/master/src/ontology/imports/ + +- prefix: /components/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/master/src/ontology/components/ - prefix: /tracker/ replacement: https://github.com/monarch-initiative/MAxO/issues @@ -25,4 +347,4 @@ entries: ## generic fall-through, serve direct from github by default - prefix: / - replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/master/ + replacement: https://github.com/monarch-initiative/MAxO/releases/latest/download/ From f0c568c9ca16ec98508b6945d436def7d17d0732 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 11 Jun 2024 22:12:32 +0300 Subject: [PATCH 2/4] Update maxo.yml --- config/maxo.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/config/maxo.yml b/config/maxo.yml index 0bf4f105..f2a9f09d 100644 --- a/config/maxo.yml +++ b/config/maxo.yml @@ -222,7 +222,6 @@ entries: - from: /releases/2021-03-22/uberon.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-03-22/maxo.obo -2021-02-23 - prefix: /releases/2021-02-09/ replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-02-09/ tests: From bd4a1ebd3537244b74ccd0e5a165b0956d2c6ca5 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 11 Jun 2024 22:18:41 +0300 Subject: [PATCH 3/4] Update maxo.yml - Fix erroneous references to uberon Copy paste error --- config/maxo.yml | 156 ++++++++++++++++++++++++------------------------ 1 file changed, 78 insertions(+), 78 deletions(-) diff --git a/config/maxo.yml b/config/maxo.yml index f2a9f09d..5473ab78 100644 --- a/config/maxo.yml +++ b/config/maxo.yml @@ -15,315 +15,315 @@ example_terms: entries: - prefix: /releases/2024-05-24/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2024-05-24/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-05-24/ tests: - from: /releases/2024-05-24/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-05-24/ - - from: /releases/2024-05-24/uberon.obo + - from: /releases/2024-05-24/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-05-24/maxo.obo - prefix: /releases/2024-02-05/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2024-02-05/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-02-05/ tests: - from: /releases/2024-02-05/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-02-05/ - - from: /releases/2024-02-05/uberon.obo + - from: /releases/2024-02-05/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-02-05/maxo.obo - prefix: /releases/2023-12-01/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-12-01/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-12-01/ tests: - from: /releases/2023-12-01/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-12-01/ - - from: /releases/2023-12-01/uberon.obo + - from: /releases/2023-12-01/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-12-01/maxo.obo - prefix: /releases/2023-10-03/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-10-03/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-10-03/ tests: - from: /releases/2023-10-03/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-10-03/ - - from: /releases/2023-10-03/uberon.obo + - from: /releases/2023-10-03/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-10-03/maxo.obo - prefix: /releases/2023-06-06/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-06-06/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-06-06/ tests: - from: /releases/2023-06-06/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-06-06/ - - from: /releases/2023-06-06/uberon.obo + - from: /releases/2023-06-06/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-06-06/maxo.obo - prefix: /releases/2023-05-17/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-05-17/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-17/ tests: - from: /releases/2023-05-17/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-17/ - - from: /releases/2023-05-17/uberon.obo + - from: /releases/2023-05-17/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-17/maxo.obo - prefix: /releases/2023-05-16/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-05-16/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-16/ tests: - from: /releases/2023-05-16/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-16/ - - from: /releases/2023-05-16/uberon.obo + - from: /releases/2023-05-16/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-16/maxo.obo - prefix: /releases/2023-05-02/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-05-02/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-02/ tests: - from: /releases/2023-05-02/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-05-02/ - 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prefix: /releases/2023-03-09/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-03-09/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-03-09/ tests: - from: /releases/2023-03-09/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-03-09/ - - from: /releases/2023-03-09/uberon.obo + - from: /releases/2023-03-09/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-03-09/maxo.obo - prefix: /releases/2023-02-20/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-02-20/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-20/ tests: - from: /releases/2023-02-20/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-20/ - - from: /releases/2023-02-20/uberon.obo + - from: /releases/2023-02-20/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-20/maxo.obo - prefix: /releases/2023-02-19/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-02-19/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-19/ tests: - from: /releases/2023-02-19/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-19/ - - from: /releases/2023-02-19/uberon.obo + - from: /releases/2023-02-19/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-19/maxo.obo - prefix: /releases/2023-02-17/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2023-02-17/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-17/ tests: - from: /releases/2023-02-17/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-17/ - - from: /releases/2023-02-17/uberon.obo + - from: /releases/2023-02-17/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2023-02-17/maxo.obo - prefix: /releases/2022-12-19/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-12-19/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-12-19/ tests: - from: /releases/2022-12-19/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-12-19/ - 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prefix: /releases/2022-11-14/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-11-14/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-11-14/ tests: - from: /releases/2022-11-14/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-11-14/ - - from: /releases/2022-11-14/uberon.obo + - from: /releases/2022-11-14/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-11-14/maxo.obo - prefix: /releases/2022-08-31/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-08-31/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-08-31/ tests: - from: /releases/2022-08-31/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-08-31/ - - from: /releases/2022-08-31/uberon.obo + - from: /releases/2022-08-31/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-08-31/maxo.obo - prefix: /releases/2022-06-24/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-06-24/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-06-24/ tests: - from: /releases/2022-06-24/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-06-24/ - - from: /releases/2022-06-24/uberon.obo + - from: /releases/2022-06-24/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-06-24/maxo.obo - prefix: /releases/2022-05-03/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-05-03/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-05-03/ tests: - from: /releases/2022-05-03/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-05-03/ - - from: /releases/2022-05-03/uberon.obo + - from: /releases/2022-05-03/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-05-03/maxo.obo - prefix: /releases/2022-03-31/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2022-03-31/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-03-31/ tests: - from: /releases/2022-03-31/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-03-31/ - - from: /releases/2022-03-31/uberon.obo + - from: /releases/2022-03-31/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2022-03-31/maxo.obo - prefix: /releases/2021-09-03/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-09-03/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-09-03/ tests: - from: /releases/2021-09-03/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-09-03/ - - from: /releases/2021-09-03/uberon.obo + - from: /releases/2021-09-03/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-09-03/maxo.obo - prefix: /releases/2021-08-16/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-08-16/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-08-16/ tests: - from: /releases/2021-08-16/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-08-16/ - - from: /releases/2021-08-16/uberon.obo + - from: /releases/2021-08-16/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-08-16/maxo.obo - prefix: /releases/2021-06-28/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-06-28/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-06-28/ tests: - from: /releases/2021-06-28/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-06-28/ - - from: /releases/2021-06-28/uberon.obo + - from: /releases/2021-06-28/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-06-28/maxo.obo - prefix: /releases/2021-03-22/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-03-22/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-03-22/ tests: - from: /releases/2021-03-22/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-03-22/ - - from: /releases/2021-03-22/uberon.obo + - from: /releases/2021-03-22/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-03-22/maxo.obo - prefix: /releases/2021-02-09/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2021-02-09/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-02-09/ tests: - from: /releases/2021-02-09/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-02-09/ - - from: /releases/2021-02-09/uberon.obo + - from: /releases/2021-02-09/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2021-02-09/maxo.obo - prefix: /releases/2020-12-10/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-12-10/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-10/ tests: - from: /releases/2020-12-10/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-10/ - - from: /releases/2020-12-10/uberon.obo + - from: /releases/2020-12-10/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-10/maxo.obo - prefix: /releases/2020-12-07/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-12-07/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-07/ tests: - from: /releases/2020-12-07/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-07/ - - from: /releases/2020-12-07/uberon.obo + - from: /releases/2020-12-07/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-12-07/maxo.obo - prefix: /releases/2020-11-16/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-11-16/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-11-16/ tests: - from: /releases/2020-11-16/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-11-16/ - - from: /releases/2020-11-16/uberon.obo + - from: /releases/2020-11-16/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-11-16/maxo.obo - prefix: /releases/2020-07-14/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-07-14/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-07-14/ tests: - from: /releases/2020-07-14/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-07-14/ - - from: /releases/2020-07-14/uberon.obo + - from: /releases/2020-07-14/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-07-14/maxo.obo - prefix: /releases/2020-06-25/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-06-25/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-25/ tests: - from: /releases/2020-06-25/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-25/ - - from: /releases/2020-06-25/uberon.obo + - from: /releases/2020-06-25/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-25/maxo.obo - prefix: /releases/2020-06-12/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-06-12/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-12/ tests: - from: /releases/2020-06-12/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-12/ - - from: /releases/2020-06-12/uberon.obo + - from: /releases/2020-06-12/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-06-12/maxo.obo - prefix: /releases/2020-05-13/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-05-13/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-05-13/ tests: - from: /releases/2020-05-13/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-05-13/ - - from: /releases/2020-05-13/uberon.obo + - from: /releases/2020-05-13/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-05-13/maxo.obo - prefix: /releases/2020-04-14/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-04-14/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-04-14/ tests: - from: /releases/2020-04-14/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-04-14/ - - from: /releases/2020-04-14/uberon.obo + - from: /releases/2020-04-14/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-04-14/maxo.obo - prefix: /releases/2020-02-10/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-02-10/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-02-10/ tests: - from: /releases/2020-02-10/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-02-10/ - - from: /releases/2020-02-10/uberon.obo + - from: /releases/2020-02-10/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-02-10/maxo.obo - prefix: /releases/2020-01-29/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-01-29/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-29/ tests: - from: /releases/2020-01-29/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-29/ - - from: /releases/2020-01-29/uberon.obo + - from: /releases/2020-01-29/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-29/maxo.obo - prefix: /releases/2020-01-16/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2020-01-16/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-16/ tests: - from: /releases/2020-01-16/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-16/ - - from: /releases/2020-01-16/uberon.obo + - from: /releases/2020-01-16/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2020-01-16/maxo.obo - prefix: /releases/2019-11-22/ - replacement: https://raw.githubusercontent.com/obophenotype/uberon/v2019-11-22/ + replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2019-11-22/ tests: - from: /releases/2019-11-22/ to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2019-11-22/ - - from: /releases/2019-11-22/uberon.obo + - from: /releases/2019-11-22/maxo.obo to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2019-11-22/maxo.obo - prefix: /releases/ From 848a54e2c4267ae0d2fb3318fdd72c7ae27963fb Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 11 Jun 2024 22:23:41 +0300 Subject: [PATCH 4/4] Update maxo.yml - remove erroneous entry --- config/maxo.yml | 8 -------- 1 file changed, 8 deletions(-) diff --git a/config/maxo.yml b/config/maxo.yml index 5473ab78..ab932d5e 100644 --- a/config/maxo.yml +++ b/config/maxo.yml @@ -14,14 +14,6 @@ example_terms: entries: -- prefix: /releases/2024-05-24/ - replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-05-24/ - tests: - - from: /releases/2024-05-24/ - to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-05-24/ - - from: /releases/2024-05-24/maxo.obo - to: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-05-24/maxo.obo - - prefix: /releases/2024-02-05/ replacement: https://raw.githubusercontent.com/monarch-initiative/MAxO/v2024-02-05/ tests: