From dece970239c9a3244d38a5a63ad08b37ebacfa30 Mon Sep 17 00:00:00 2001 From: Jacques Dainat Date: Thu, 12 Sep 2024 10:14:38 +0200 Subject: [PATCH] reflect change in width --- .../out/agat_sp_manage_introns_1.txt | 250 +++++---- t/scripts_output/out/agat_sp_statistics_1.txt | 486 +++++++++--------- 2 files changed, 386 insertions(+), 350 deletions(-) diff --git a/t/scripts_output/out/agat_sp_manage_introns_1.txt b/t/scripts_output/out/agat_sp_manage_introns_1.txt index 83c2a9dd..40660068 100644 --- a/t/scripts_output/out/agat_sp_manage_introns_1.txt +++ b/t/scripts_output/out/agat_sp_manage_introns_1.txt @@ -1,120 +1,156 @@ -usage: bin/agat_sp_manage_introns.pl --gff t/scripts_output/in/1.gff -o tmp.gff +usage: bin/agat_sp_manage_introns.pl --gff t/scripts_output/in/1.gff -o resuTes -------------------------------------------------------------------------------- ---------------------------------- chromosome ---------------------------------- -Number of chromosome 1 -Number chromosome overlapping 0 -Total chromosome length (bp) 43270923 -mean chromosome length (bp) 43270923 -Longest chromosome (bp) 43270923 -Shortest chromosome (bp) 43270923 +Number of chromosome 1 +Number chromosome overlapping 0 +Total chromosome length (bp) 43270923 +mean chromosome length (bp) 43270923 +median chromosome length (bp) 43270923 +90 percentile chromosome length (bp) na +Longest chromosome (bp) 43270923 +Shortest chromosome (bp) 43270923 -------------------------------- repeat_region --------------------------------- -Number of repeat_region 2 -Number repeat_region overlapping 0 -Total repeat_region length (bp) 202 -mean repeat_region length (bp) 101 -Longest repeat_region (bp) 101 -Shortest repeat_region (bp) 101 +Number of repeat_region 2 +Number repeat_region overlapping 0 +Total repeat_region length (bp) 202 +mean repeat_region length (bp) 101 +median repeat_region length (bp) 101 +90 percentile repeat_region length (bp) na +Longest repeat_region (bp) 101 +Shortest repeat_region (bp) 101 ------------------------------------- mrna ------------------------------------- -Number of gene 52 -Number of mrna 65 -Number of mrnas with utr both sides 59 -Number of mrnas with at least one utr 62 -Number of cds 64 -Number of exon 319 -Number of five_prime_utr 60 -Number of three_prime_utr 61 -Number of exon in cds 290 -Number of exon in five_prime_utr 79 -Number of exon in three_prime_utr 70 -Number of intron in cds 226 -Number of intron in exon 254 -Number of intron in five_prime_utr 19 -Number of intron in three_prime_utr 9 -Number gene overlapping 9 -Number of single exon gene 8 -Number of single exon mrna 10 -mean mrnas per gene 1.2 -mean cdss per mrna 1.0 -mean exons per mrna 4.9 -mean five_prime_utrs per mrna 0.9 -mean three_prime_utrs per mrna 0.9 -mean exons per cds 4.5 -mean exons per five_prime_utr 1.3 -mean exons per three_prime_utr 1.1 -mean introns in cdss per mrna 3.5 -mean introns in exons per mrna 3.9 -mean introns in five_prime_utrs per mrna 0.3 -mean introns in three_prime_utrs per mrna 0.1 -Total gene length (bp) 158829 -Total mrna length (bp) 197986 -Total cds length (bp) 69687 -Total exon length (bp) 108170 -Total five_prime_utr length (bp) 11773 -Total three_prime_utr length (bp) 25596 -Total intron length per cds (bp) 77787 -Total intron length per exon (bp) 89816 -Total intron length per five_prime_utr (bp) 11235 -Total intron length per three_prime_utr (bp) 794 -mean gene length (bp) 3054 -mean mrna length (bp) 3045 -mean cds length (bp) 1088 -mean exon length (bp) 339 -mean five_prime_utr length (bp) 196 -mean three_prime_utr length (bp) 419 -mean cds piece length (bp) 240 -mean five_prime_utr piece length (bp) 149 -mean three_prime_utr piece length (bp) 365 -mean intron in cds length (bp) 344 -mean intron in exon length (bp) 353 -mean intron in five_prime_utr length (bp) 591 -mean intron in three_prime_utr length (bp) 88 -Longest gene (bp) 8045 -Longest mrna (bp) 8045 -Longest cds (bp) 2937 -Longest exon (bp) 2854 -Longest five_prime_utr (bp) 2197 -Longest three_prime_utr (bp) 2780 -Longest cds piece (bp) 2433 -Longest five_prime_utr piece (bp) 2027 -Longest three_prime_utr piece (bp) 2780 -Longest intron into cds part (bp) 3534 -Longest intron into exon part (bp) 4350 -Longest intron into five_prime_utr part (bp) 4350 -Longest intron into three_prime_utr part (bp)127 -Shortest gene (bp) 346 -Shortest mrna (bp) 346 -Shortest cds piece (bp) 2 -Shortest five_prime_utr piece (bp) 1 -Shortest three_prime_utr piece (bp) 16 -Shortest intron into cds part (bp) 69 -Shortest intron into exon part (bp) 39 -Shortest intron into five_prime_utr part (bp)76 -Shortest intron into three_prime_utr part (bp)39 +Number of gene 52 +Number of mrna 65 +Number of mrnas with utr both sides 59 +Number of mrnas with at least one utr 62 +Number of cds 64 +Number of exon 319 +Number of five_prime_utr 60 +Number of three_prime_utr 61 +Number of exon in cds 290 +Number of exon in five_prime_utr 79 +Number of exon in three_prime_utr 70 +Number of intron in cds 226 +Number of intron in exon 254 +Number of intron in five_prime_utr 19 +Number of intron in three_prime_utr 9 +Number gene overlapping 9 +Number of single exon gene 8 +Number of single exon mrna 10 +mean mrnas per gene 1.2 +mean cdss per mrna 1.0 +mean exons per mrna 4.9 +mean five_prime_utrs per mrna 0.9 +mean three_prime_utrs per mrna 0.9 +mean exons per cds 4.5 +mean exons per five_prime_utr 1.3 +mean exons per three_prime_utr 1.1 +mean introns in cdss per mrna 3.5 +mean introns in exons per mrna 3.9 +mean introns in five_prime_utrs per mrna 0.3 +mean introns in three_prime_utrs per mrna 0.1 +Total gene length (bp) 158829 +Total mrna length (bp) 197986 +Total cds length (bp) 69687 +Total exon length (bp) 108170 +Total five_prime_utr length (bp) 11773 +Total three_prime_utr length (bp) 25596 +Total intron length per cds (bp) 77787 +Total intron length per exon (bp) 89816 +Total intron length per five_prime_utr (bp) 11235 +Total intron length per three_prime_utr (bp) 794 +mean gene length (bp) 3054 +mean mrna length (bp) 3046 +mean cds length (bp) 1089 +mean exon length (bp) 339 +mean five_prime_utr length (bp) 196 +mean three_prime_utr length (bp) 420 +mean cds piece length (bp) 240 +mean five_prime_utr piece length (bp) 149 +mean three_prime_utr piece length (bp) 366 +mean intron in cds length (bp) 344 +mean intron in exon length (bp) 354 +mean intron in five_prime_utr length (bp) 591 +mean intron in three_prime_utr length (bp) 88 +median gene length (bp) 2540 +median mrna length (bp) 2484 +median cds length (bp) 128 +median exon length (bp) 165 +median five_prime_utr length (bp) 78 +median three_prime_utr length (bp) 245 +median cds piece length (bp) 128 +median five_prime_utr piece length (bp) 78 +median three_prime_utr piece length (bp) 245 +median intron in cds length (bp) 133 +median intron in exon length (bp) 129 +median intron in five_prime_utr length (bp) 123 +median intron in three_prime_utr length (bp) 79 +90 percentile gene length (bp) 5514 +90 percentile mrna length (bp) 5514 +90 percentile cds length (bp) 521 +90 percentile exon length (bp) 818 +90 percentile five_prime_utr length (bp) 379 +90 percentile three_prime_utr length (bp) 691 +90 percentile cds piece length (bp) 521 +90 percentile five_prime_utr piece length (bp) 379 +90 percentile three_prime_utr piece length (bp) 691 +90 percentile intron in cds length (bp) 791 +90 percentile intron in exon length (bp) 770 +90 percentile intron in five_prime_utr length (bp) 3593 +90 percentile intron in three_prime_utr length (bp) na +Longest gene (bp) 8045 +Longest mrna (bp) 8045 +Longest cds (bp) 2937 +Longest exon (bp) 2854 +Longest five_prime_utr (bp) 2197 +Longest three_prime_utr (bp) 2780 +Longest cds piece (bp) 2433 +Longest five_prime_utr piece (bp) 2027 +Longest three_prime_utr piece (bp) 2780 +Longest intron into cds part (bp) 3534 +Longest intron into exon part (bp) 4350 +Longest intron into five_prime_utr part (bp) 4350 +Longest intron into three_prime_utr part (bp) 127 +Shortest gene (bp) 346 +Shortest mrna (bp) 346 +Shortest cds piece (bp) 2 +Shortest five_prime_utr piece (bp) 1 +Shortest three_prime_utr piece (bp) 16 +Shortest intron into cds part (bp) 69 +Shortest intron into exon part (bp) 39 +Shortest intron into five_prime_utr part (bp) 76 +Shortest intron into three_prime_utr part (bp) 39 ------------------------------------- trna ------------------------------------- -Number of ncrna_gene 1 -Number of trna 1 -Number of exon 1 -Number ncrna_gene overlapping 0 -Number of single exon ncrna_gene 1 -Number of single exon trna 1 -mean trnas per ncrna_gene 1.0 -mean exons per trna 1.0 -Total ncrna_gene length (bp) 81 -Total trna length (bp) 81 -Total exon length (bp) 81 -mean ncrna_gene length (bp) 81 -mean trna length (bp) 81 -mean exon length (bp) 81 -Longest ncrna_gene (bp) 81 -Longest trna (bp) 81 -Longest exon (bp) 81 -Shortest ncrna_gene (bp) 81 -Shortest trna (bp) 81 +Number of ncrna_gene 1 +Number of trna 1 +Number of exon 1 +Number ncrna_gene overlapping 0 +Number of single exon ncrna_gene 1 +Number of single exon trna 1 +mean trnas per ncrna_gene 1.0 +mean exons per trna 1.0 +Total ncrna_gene length (bp) 81 +Total trna length (bp) 81 +Total exon length (bp) 81 +mean ncrna_gene length (bp) 81 +mean trna length (bp) 81 +mean exon length (bp) 81 +median ncrna_gene length (bp) 81 +median trna length (bp) 81 +median exon length (bp) 81 +90 percentile ncrna_gene length (bp) na +90 percentile trna length (bp) na +90 percentile exon length (bp) na +Longest ncrna_gene (bp) 81 +Longest trna (bp) 81 +Longest exon (bp) 81 +Shortest ncrna_gene (bp) 81 +Shortest trna (bp) 81 Introns in feature cds: Removing 1 percent of the highest values (2 values) gives you 3196 bp as the longest intron in cds. Introns in feature exon: Removing 1 percent of the highest values (2 values) gives you 3535 bp as the longest intron in exon. diff --git a/t/scripts_output/out/agat_sp_statistics_1.txt b/t/scripts_output/out/agat_sp_statistics_1.txt index 02c3b2a6..432461a6 100644 --- a/t/scripts_output/out/agat_sp_statistics_1.txt +++ b/t/scripts_output/out/agat_sp_statistics_1.txt @@ -1,256 +1,256 @@ -------------------------------------------------------------------------------- ---------------------------------- chromosome ---------------------------------- -Number of chromosome 1 -Number chromosome overlapping 0 -Total chromosome length (bp) 43270923 -mean chromosome length (bp) 43270923 -median chromosome length (bp) 43270923 -90 percentile chromosome length (bp) na -Longest chromosome (bp) 43270923 -Shortest chromosome (bp) 43270923 +Number of chromosome 1 +Number chromosome overlapping 0 +Total chromosome length (bp) 43270923 +mean chromosome length (bp) 43270923 +median chromosome length (bp) 43270923 +90 percentile chromosome length (bp) na +Longest chromosome (bp) 43270923 +Shortest chromosome (bp) 43270923 -------------------------------- repeat_region --------------------------------- -Number of repeat_region 2 -Number repeat_region overlapping 0 -Total repeat_region length (bp) 202 -mean repeat_region length (bp) 101 -median repeat_region length (bp) 101 -90 percentile repeat_region length (bp) na -Longest repeat_region (bp) 101 -Shortest repeat_region (bp) 101 +Number of repeat_region 2 +Number repeat_region overlapping 0 +Total repeat_region length (bp) 202 +mean repeat_region length (bp) 101 +median repeat_region length (bp) 101 +90 percentile repeat_region length (bp) na +Longest repeat_region (bp) 101 +Shortest repeat_region (bp) 101 ------------------------------------- mrna ------------------------------------- -Number of gene 52 -Number of mrna 65 -Number of mrnas with utr both sides 59 -Number of mrnas with at least one utr 62 -Number of cds 64 -Number of exon 319 -Number of five_prime_utr 60 -Number of three_prime_utr 61 -Number of exon in cds 290 -Number of exon in five_prime_utr 79 -Number of exon in three_prime_utr 70 -Number of intron in cds 226 -Number of intron in exon 254 -Number of intron in five_prime_utr 19 -Number of intron in three_prime_utr 9 -Number gene overlapping 9 -Number of single exon gene 8 -Number of single exon mrna 10 -mean mrnas per gene 1.2 -mean cdss per mrna 1.0 -mean exons per mrna 4.9 -mean five_prime_utrs per mrna 0.9 -mean three_prime_utrs per mrna 0.9 -mean exons per cds 4.5 -mean exons per five_prime_utr 1.3 -mean exons per three_prime_utr 1.1 -mean introns in cdss per mrna 3.5 -mean introns in exons per mrna 3.9 -mean introns in five_prime_utrs per mrna 0.3 -mean introns in three_prime_utrs per mrna 0.1 -Total gene length (bp) 158829 -Total mrna length (bp) 197986 -Total cds length (bp) 69687 -Total exon length (bp) 108170 -Total five_prime_utr length (bp) 11773 -Total three_prime_utr length (bp) 25596 -Total intron length per cds (bp) 77787 -Total intron length per exon (bp) 89816 -Total intron length per five_prime_utr (bp) 11235 -Total intron length per three_prime_utr (bp) 794 -mean gene length (bp) 3054 -mean mrna length (bp) 3046 -mean cds length (bp) 1089 -mean exon length (bp) 339 -mean five_prime_utr length (bp) 196 -mean three_prime_utr length (bp) 420 -mean cds piece length (bp) 240 -mean five_prime_utr piece length (bp) 149 -mean three_prime_utr piece length (bp) 366 -mean intron in cds length (bp) 344 -mean intron in exon length (bp) 354 -mean intron in five_prime_utr length (bp) 591 -mean intron in three_prime_utr length (bp) 88 -median gene length (bp) 2540 -median mrna length (bp) 2484 -median cds length (bp) 128 -median exon length (bp) 165 -median five_prime_utr length (bp) 78 -median three_prime_utr length (bp) 245 -median cds piece length (bp) 128 -median five_prime_utr piece length (bp) 78 -median three_prime_utr piece length (bp) 245 -median intron in cds length (bp) 133 -median intron in exon length (bp) 129 -median intron in five_prime_utr length (bp) 123 -median intron in three_prime_utr length (bp) 79 -90 percentile gene length (bp) 5514 -90 percentile mrna length (bp) 5514 -90 percentile cds length (bp) 521 -90 percentile exon length (bp) 818 -90 percentile five_prime_utr length (bp) 379 -90 percentile three_prime_utr length (bp) 691 -90 percentile cds piece length (bp) 521 -90 percentile five_prime_utr piece length (bp)379 -90 percentile three_prime_utr piece length (bp)691 -90 percentile intron in cds length (bp) 791 -90 percentile intron in exon length (bp) 770 -90 percentile intron in five_prime_utr length (bp)3593 -90 percentile intron in three_prime_utr length (bp)na -Longest gene (bp) 8045 -Longest mrna (bp) 8045 -Longest cds (bp) 2937 -Longest exon (bp) 2854 -Longest five_prime_utr (bp) 2197 -Longest three_prime_utr (bp) 2780 -Longest cds piece (bp) 2433 -Longest five_prime_utr piece (bp) 2027 -Longest three_prime_utr piece (bp) 2780 -Longest intron into cds part (bp) 3534 -Longest intron into exon part (bp) 4350 -Longest intron into five_prime_utr part (bp) 4350 -Longest intron into three_prime_utr part (bp)127 -Shortest gene (bp) 346 -Shortest mrna (bp) 346 -Shortest cds piece (bp) 2 -Shortest five_prime_utr piece (bp) 1 -Shortest three_prime_utr piece (bp) 16 -Shortest intron into cds part (bp) 69 -Shortest intron into exon part (bp) 39 -Shortest intron into five_prime_utr part (bp)76 -Shortest intron into three_prime_utr part (bp)39 +Number of gene 52 +Number of mrna 65 +Number of mrnas with utr both sides 59 +Number of mrnas with at least one utr 62 +Number of cds 64 +Number of exon 319 +Number of five_prime_utr 60 +Number of three_prime_utr 61 +Number of exon in cds 290 +Number of exon in five_prime_utr 79 +Number of exon in three_prime_utr 70 +Number of intron in cds 226 +Number of intron in exon 254 +Number of intron in five_prime_utr 19 +Number of intron in three_prime_utr 9 +Number gene overlapping 9 +Number of single exon gene 8 +Number of single exon mrna 10 +mean mrnas per gene 1.2 +mean cdss per mrna 1.0 +mean exons per mrna 4.9 +mean five_prime_utrs per mrna 0.9 +mean three_prime_utrs per mrna 0.9 +mean exons per cds 4.5 +mean exons per five_prime_utr 1.3 +mean exons per three_prime_utr 1.1 +mean introns in cdss per mrna 3.5 +mean introns in exons per mrna 3.9 +mean introns in five_prime_utrs per mrna 0.3 +mean introns in three_prime_utrs per mrna 0.1 +Total gene length (bp) 158829 +Total mrna length (bp) 197986 +Total cds length (bp) 69687 +Total exon length (bp) 108170 +Total five_prime_utr length (bp) 11773 +Total three_prime_utr length (bp) 25596 +Total intron length per cds (bp) 77787 +Total intron length per exon (bp) 89816 +Total intron length per five_prime_utr (bp) 11235 +Total intron length per three_prime_utr (bp) 794 +mean gene length (bp) 3054 +mean mrna length (bp) 3046 +mean cds length (bp) 1089 +mean exon length (bp) 339 +mean five_prime_utr length (bp) 196 +mean three_prime_utr length (bp) 420 +mean cds piece length (bp) 240 +mean five_prime_utr piece length (bp) 149 +mean three_prime_utr piece length (bp) 366 +mean intron in cds length (bp) 344 +mean intron in exon length (bp) 354 +mean intron in five_prime_utr length (bp) 591 +mean intron in three_prime_utr length (bp) 88 +median gene length (bp) 2540 +median mrna length (bp) 2484 +median cds length (bp) 128 +median exon length (bp) 165 +median five_prime_utr length (bp) 78 +median three_prime_utr length (bp) 245 +median cds piece length (bp) 128 +median five_prime_utr piece length (bp) 78 +median three_prime_utr piece length (bp) 245 +median intron in cds length (bp) 133 +median intron in exon length (bp) 129 +median intron in five_prime_utr length (bp) 123 +median intron in three_prime_utr length (bp) 79 +90 percentile gene length (bp) 5514 +90 percentile mrna length (bp) 5514 +90 percentile cds length (bp) 521 +90 percentile exon length (bp) 818 +90 percentile five_prime_utr length (bp) 379 +90 percentile three_prime_utr length (bp) 691 +90 percentile cds piece length (bp) 521 +90 percentile five_prime_utr piece length (bp) 379 +90 percentile three_prime_utr piece length (bp) 691 +90 percentile intron in cds length (bp) 791 +90 percentile intron in exon length (bp) 770 +90 percentile intron in five_prime_utr length (bp) 3593 +90 percentile intron in three_prime_utr length (bp) na +Longest gene (bp) 8045 +Longest mrna (bp) 8045 +Longest cds (bp) 2937 +Longest exon (bp) 2854 +Longest five_prime_utr (bp) 2197 +Longest three_prime_utr (bp) 2780 +Longest cds piece (bp) 2433 +Longest five_prime_utr piece (bp) 2027 +Longest three_prime_utr piece (bp) 2780 +Longest intron into cds part (bp) 3534 +Longest intron into exon part (bp) 4350 +Longest intron into five_prime_utr part (bp) 4350 +Longest intron into three_prime_utr part (bp) 127 +Shortest gene (bp) 346 +Shortest mrna (bp) 346 +Shortest cds piece (bp) 2 +Shortest five_prime_utr piece (bp) 1 +Shortest three_prime_utr piece (bp) 16 +Shortest intron into cds part (bp) 69 +Shortest intron into exon part (bp) 39 +Shortest intron into five_prime_utr part (bp) 76 +Shortest intron into three_prime_utr part (bp) 39 mrna have isoforms! Here are the statistics without isoforms shortest isoforms excluded): -Number of gene 52 -Number of mrna 52 -Number of mrnas with utr both sides 46 -Number of mrnas with at least one utr 49 -Number of cds 51 -Number of exon 260 -Number of five_prime_utr 47 -Number of three_prime_utr 48 -Number of exon in cds 232 -Number of exon in five_prime_utr 65 -Number of exon in three_prime_utr 57 -Number of intron in cds 181 -Number of intron in exon 208 -Number of intron in five_prime_utr 18 -Number of intron in three_prime_utr 9 -Number gene overlapping 8 -Number of single exon gene 8 -Number of single exon mrna 8 -mean mrnas per gene 1.0 -mean cdss per mrna 1.0 -mean exons per mrna 5.0 -mean five_prime_utrs per mrna 0.9 -mean three_prime_utrs per mrna 0.9 -mean exons per cds 4.5 -mean exons per five_prime_utr 1.4 -mean exons per three_prime_utr 1.2 -mean introns in cdss per mrna 3.5 -mean introns in exons per mrna 4.0 -mean introns in five_prime_utrs per mrna 0.3 -mean introns in three_prime_utrs per mrna 0.2 -Total gene length (bp) 158829 -Total mrna length (bp) 155823 -Total cds length (bp) 53754 -Total exon length (bp) 83174 -Total five_prime_utr length (bp) 10367 -Total three_prime_utr length (bp) 17939 -Total intron length per cds (bp) 60743 -Total intron length per exon (bp) 72649 -Total intron length per five_prime_utr (bp) 11112 -Total intron length per three_prime_utr (bp) 794 -mean gene length (bp) 3054 -mean mrna length (bp) 2997 -mean cds length (bp) 1054 -mean exon length (bp) 320 -mean five_prime_utr length (bp) 221 -mean three_prime_utr length (bp) 374 -mean cds piece length (bp) 232 -mean five_prime_utr piece length (bp) 159 -mean three_prime_utr piece length (bp) 315 -mean intron in cds length (bp) 336 -mean intron in exon length (bp) 349 -mean intron in five_prime_utr length (bp) 617 -mean intron in three_prime_utr length (bp) 88 -median gene length (bp) 2540 -median mrna length (bp) 2468 -median cds length (bp) 125 -median exon length (bp) 160 -median five_prime_utr length (bp) 87 -median three_prime_utr length (bp) 235 -median cds piece length (bp) 125 -median five_prime_utr piece length (bp) 87 -median three_prime_utr piece length (bp) 235 -median intron in cds length (bp) 133 -median intron in exon length (bp) 127 -median intron in five_prime_utr length (bp) 123 -median intron in three_prime_utr length (bp) 79 -90 percentile gene length (bp) 5514 -90 percentile mrna length (bp) 5514 -90 percentile cds length (bp) 514 -90 percentile exon length (bp) 701 -90 percentile five_prime_utr length (bp) 371 -90 percentile three_prime_utr length (bp) 646 -90 percentile cds piece length (bp) 514 -90 percentile five_prime_utr piece length (bp)371 -90 percentile three_prime_utr piece length (bp)646 -90 percentile intron in cds length (bp) 770 -90 percentile intron in exon length (bp) 770 -90 percentile intron in five_prime_utr length (bp)3593 -90 percentile intron in three_prime_utr length (bp)na -Longest gene (bp) 8045 -Longest mrna (bp) 7833 -Longest cds (bp) 2937 -Longest exon (bp) 2854 -Longest five_prime_utr (bp) 2197 -Longest three_prime_utr (bp) 2780 -Longest cds piece (bp) 2433 -Longest five_prime_utr piece (bp) 2027 -Longest three_prime_utr piece (bp) 2780 -Longest intron into cds part (bp) 3534 -Longest intron into exon part (bp) 4350 -Longest intron into five_prime_utr part (bp) 4350 -Longest intron into three_prime_utr part (bp)127 -Shortest gene (bp) 346 -Shortest mrna (bp) 346 -Shortest cds piece (bp) 2 -Shortest five_prime_utr piece (bp) 1 -Shortest three_prime_utr piece (bp) 16 -Shortest intron into cds part (bp) 69 -Shortest intron into exon part (bp) 39 -Shortest intron into five_prime_utr part (bp)76 -Shortest intron into three_prime_utr part (bp)39 +Number of gene 52 +Number of mrna 52 +Number of mrnas with utr both sides 46 +Number of mrnas with at least one utr 49 +Number of cds 51 +Number of exon 260 +Number of five_prime_utr 47 +Number of three_prime_utr 48 +Number of exon in cds 232 +Number of exon in five_prime_utr 65 +Number of exon in three_prime_utr 57 +Number of intron in cds 181 +Number of intron in exon 208 +Number of intron in five_prime_utr 18 +Number of intron in three_prime_utr 9 +Number gene overlapping 8 +Number of single exon gene 8 +Number of single exon mrna 8 +mean mrnas per gene 1.0 +mean cdss per mrna 1.0 +mean exons per mrna 5.0 +mean five_prime_utrs per mrna 0.9 +mean three_prime_utrs per mrna 0.9 +mean exons per cds 4.5 +mean exons per five_prime_utr 1.4 +mean exons per three_prime_utr 1.2 +mean introns in cdss per mrna 3.5 +mean introns in exons per mrna 4.0 +mean introns in five_prime_utrs per mrna 0.3 +mean introns in three_prime_utrs per mrna 0.2 +Total gene length (bp) 158829 +Total mrna length (bp) 155823 +Total cds length (bp) 53754 +Total exon length (bp) 83174 +Total five_prime_utr length (bp) 10367 +Total three_prime_utr length (bp) 17939 +Total intron length per cds (bp) 60743 +Total intron length per exon (bp) 72649 +Total intron length per five_prime_utr (bp) 11112 +Total intron length per three_prime_utr (bp) 794 +mean gene length (bp) 3054 +mean mrna length (bp) 2997 +mean cds length (bp) 1054 +mean exon length (bp) 320 +mean five_prime_utr length (bp) 221 +mean three_prime_utr length (bp) 374 +mean cds piece length (bp) 232 +mean five_prime_utr piece length (bp) 159 +mean three_prime_utr piece length (bp) 315 +mean intron in cds length (bp) 336 +mean intron in exon length (bp) 349 +mean intron in five_prime_utr length (bp) 617 +mean intron in three_prime_utr length (bp) 88 +median gene length (bp) 2540 +median mrna length (bp) 2468 +median cds length (bp) 125 +median exon length (bp) 160 +median five_prime_utr length (bp) 87 +median three_prime_utr length (bp) 235 +median cds piece length (bp) 125 +median five_prime_utr piece length (bp) 87 +median three_prime_utr piece length (bp) 235 +median intron in cds length (bp) 133 +median intron in exon length (bp) 127 +median intron in five_prime_utr length (bp) 123 +median intron in three_prime_utr length (bp) 79 +90 percentile gene length (bp) 5514 +90 percentile mrna length (bp) 5514 +90 percentile cds length (bp) 514 +90 percentile exon length (bp) 701 +90 percentile five_prime_utr length (bp) 371 +90 percentile three_prime_utr length (bp) 646 +90 percentile cds piece length (bp) 514 +90 percentile five_prime_utr piece length (bp) 371 +90 percentile three_prime_utr piece length (bp) 646 +90 percentile intron in cds length (bp) 770 +90 percentile intron in exon length (bp) 770 +90 percentile intron in five_prime_utr length (bp) 3593 +90 percentile intron in three_prime_utr length (bp) na +Longest gene (bp) 8045 +Longest mrna (bp) 7833 +Longest cds (bp) 2937 +Longest exon (bp) 2854 +Longest five_prime_utr (bp) 2197 +Longest three_prime_utr (bp) 2780 +Longest cds piece (bp) 2433 +Longest five_prime_utr piece (bp) 2027 +Longest three_prime_utr piece (bp) 2780 +Longest intron into cds part (bp) 3534 +Longest intron into exon part (bp) 4350 +Longest intron into five_prime_utr part (bp) 4350 +Longest intron into three_prime_utr part (bp) 127 +Shortest gene (bp) 346 +Shortest mrna (bp) 346 +Shortest cds piece (bp) 2 +Shortest five_prime_utr piece (bp) 1 +Shortest three_prime_utr piece (bp) 16 +Shortest intron into cds part (bp) 69 +Shortest intron into exon part (bp) 39 +Shortest intron into five_prime_utr part (bp) 76 +Shortest intron into three_prime_utr part (bp) 39 ------------------------------------- trna ------------------------------------- -Number of ncrna_gene 1 -Number of trna 1 -Number of exon 1 -Number ncrna_gene overlapping 0 -Number of single exon ncrna_gene 1 -Number of single exon trna 1 -mean trnas per ncrna_gene 1.0 -mean exons per trna 1.0 -Total ncrna_gene length (bp) 81 -Total trna length (bp) 81 -Total exon length (bp) 81 -mean ncrna_gene length (bp) 81 -mean trna length (bp) 81 -mean exon length (bp) 81 -median ncrna_gene length (bp) 81 -median trna length (bp) 81 -median exon length (bp) 81 -90 percentile ncrna_gene length (bp) na -90 percentile trna length (bp) na -90 percentile exon length (bp) na -Longest ncrna_gene (bp) 81 -Longest trna (bp) 81 -Longest exon (bp) 81 -Shortest ncrna_gene (bp) 81 -Shortest trna (bp) 81 +Number of ncrna_gene 1 +Number of trna 1 +Number of exon 1 +Number ncrna_gene overlapping 0 +Number of single exon ncrna_gene 1 +Number of single exon trna 1 +mean trnas per ncrna_gene 1.0 +mean exons per trna 1.0 +Total ncrna_gene length (bp) 81 +Total trna length (bp) 81 +Total exon length (bp) 81 +mean ncrna_gene length (bp) 81 +mean trna length (bp) 81 +mean exon length (bp) 81 +median ncrna_gene length (bp) 81 +median trna length (bp) 81 +median exon length (bp) 81 +90 percentile ncrna_gene length (bp) na +90 percentile trna length (bp) na +90 percentile exon length (bp) na +Longest ncrna_gene (bp) 81 +Longest trna (bp) 81 +Longest exon (bp) 81 +Shortest ncrna_gene (bp) 81 +Shortest trna (bp) 81