diff --git a/suite2p/gui/rungui.py b/suite2p/gui/rungui.py index 3ec519e7..995a01cf 100644 --- a/suite2p/gui/rungui.py +++ b/suite2p/gui/rungui.py @@ -119,8 +119,9 @@ def create_buttons(self): nrkeys = [["nonrigid", "block_size", "snr_thresh", "maxregshiftNR"], ["1Preg", "spatial_hp_reg", "pre_smooth", "spatial_taper"]] cellkeys = [ - "roidetect", "sparse_mode", "denoise", "spatial_scale", "threshold_scaling", - "max_overlap", "max_iterations", "high_pass", "spatial_hp_detect" + "roidetect", "sparse_mode", "denoise", "spatial_scale", "connected", + "threshold_scaling", "max_overlap", "max_iterations", "high_pass", + "spatial_hp_detect" ] anatkeys = [ "anatomical_only", "diameter", "cellprob_threshold", "flow_threshold", @@ -177,6 +178,7 @@ def create_buttons(self): "if 1, run sparse_mode cell detection", "if 1, run PCA denoising on binned movie to improve cell detection", "choose size of ROIs: 0 = multi-scale; 1 = 6 pixels, 2 = 12, 3 = 24, 4 = 48", + "whether or not to require ROIs to be fully connected (set to 0 for dendrites/boutons)", "adjust the automatically determined threshold for finding ROIs by this scalar multiplier", "ROIs with greater than this overlap as a fraction of total pixels will be discarded", "maximum number of iterations for ROI detection",