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(ERR): bowtie2-align died with signal 9 (KILL) #343

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zonglanlan opened this issue Aug 9, 2024 · 0 comments
Open

(ERR): bowtie2-align died with signal 9 (KILL) #343

zonglanlan opened this issue Aug 9, 2024 · 0 comments

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@zonglanlan
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(ERR): bowtie2-align died with signal 9 (KILL)

2024-08-09 09:06:36,038 - ERROR:
Traceback (most recent call last):
File "/ds3200_1/users_root/username/miniconda3/envs/getorganelle/bin/get_organelle_from_reads.py", line 3948, in main
seed_fq, seed_sam, new_seed_f = making_seed_reads_using_mapping(
File "/ds3200_1/users_root/username/miniconda3/envs/getorganelle/bin/get_organelle_from_reads.py", line 3047, in making_seed_reads_using_mapping
map_with_bowtie2(seed_file=seed_file, original_fq_files=original_fq_files,
File "/ds3200_1/users_root/username/miniconda3/envs/getorganelle/lib/python3.8/site-packages/GetOrganelleLib/pipe_control_func.py", line 414, in map_with_bowtie2
raise Exception("")

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