Error with OS return value: 22; Can anyone please help me with a solution ?

[avvypaks]

023-03-15 15:07:43,679 - INFO: Separating extended fastq file ...
2023-03-15 15:07:43,763 - INFO: Setting '-k 21,55,85,115'
2023-03-15 15:07:43,763 - INFO: Assembling using SPAdes ...
2023-03-15 15:07:43,787 - INFO: spades.py -t 1 --phred-offset 33 -1 Arabidopsis_simulated.plastome/extended_1_paired.fq -2 Arabidopsis_simulated.plastome/extended_2_paired.fq --s1 Arabidopsis_simulated.plastome/extended_1_unpaired.fq --s2 Arabidopsis_simulated.plastome/extended_2_unpaired.fq -k 21,55,85,115 -o Arabidopsis_simulated.plastome/extended_spades
2023-03-15 15:07:44,373 - ERROR: Error with running SPAdes: == Error == system call for: "['/Users/innovation_user/opt/anaconda3/envs/fassembly/bin/spades-hammer', '/Users/innovation_user/Arabidopsis_simulated.plastome/extended_spades/corrected/configs/config.info']" finished abnormally, OS return value: 22
2023-03-15 15:07:44,396 - ERROR: Assembling failed.

[avvypaks]

Is it an out-of-memory issue?

[Kinggerm]

It may probably be caused by a disk access issue.

[avvypaks]

Hi Jin,
Thank you for the response.
Can you kindly tell me what I should do to run getorganelle in my device?

[Kinggerm]

I didn't see a clue here. It's not something people can do from the tool side.
It was an environmentally dependent issue. Free up some space and make sure you have the right permissions.

[avvypaks]

OK. Thank you. Will do!