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Increased viability phenotypes #147

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Clare72 opened this issue Jul 1, 2022 · 2 comments
Open

Increased viability phenotypes #147

Clare72 opened this issue Jul 1, 2022 · 2 comments
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new term request New ontology class is needed

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@Clare72
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Clare72 commented Jul 1, 2022

We already have 'long-lived' but might want to consider phenotypes for increased viability during development or increased survival due to some kind of challenge e.g. starvation, infection...

@Clare72 Clare72 added the new term request New ontology class is needed label Jul 1, 2022
@Clare72 Clare72 self-assigned this Jul 1, 2022
@Clare72
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Clare72 commented Aug 18, 2022

I think the increased survival due to some kind of challenge could use the abnormallyIncreasedResistanceOfWholeOrganismToEntity pattern ('abnormallyDecreased' and 'abnormal' also available) possibly coupled with terms from XCO for conditions (e.g. 'fasting', 'pathogen')

@Clare72
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Clare72 commented Aug 18, 2022

For increased viability during development, something similar to the terms under 'increased mortality during development' might be best:
label: 'decreased mortality during development'
logical def would be something like:
'has part' some (('inheres in' some ('population of Drosophila' and ('has member' some ('multicellular organism' and (has_age some (precedes some 'mature adult stage')))) and ('has member' only ('multicellular organism' and (has_age some (precedes some 'mature adult stage')))))) and ('has decreased age-specific mortality rate' some xsd:short[>= "5"^^xsd:short])

Would require a new data property for 'decreased age specific mortality rate'.
Like the lethal phase terms, this is not currently possible to patternise in upeno.

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