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Adjust hard filtering filters - HIGH PRIORITY #28

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LysianeBouchard opened this issue Oct 1, 2024 · 0 comments
Open

Adjust hard filtering filters - HIGH PRIORITY #28

LysianeBouchard opened this issue Oct 1, 2024 · 0 comments
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enhancement New feature or request

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@LysianeBouchard
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Description of feature

We will need to tweak the filters used in the hard filtering process as we are not sure that they are optimal.

Look at the recommendations in this article:
https://gatk.broadinstitute.org/hc/en-us/articles/360035531112--How-to-Filter-variants-either-with-VQSR-or-by-hard-filtering

These parameters should be documented properly as well as the rationale for the choice of default values.

@LysianeBouchard LysianeBouchard added the enhancement New feature or request label Oct 1, 2024
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enhancement New feature or request
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