From 1fa6674f20a9cd9f8282ee6dcf1549638d0a1de0 Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Fri, 9 Aug 2024 14:44:12 +1200 Subject: [PATCH 01/15] Add jupyter-sshd-proxy Run sshd under jupyter. Repo at https://github.com/yuvipanda/jupyter-sshd-proxy --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index 2f0fb39..a5559f0 100644 --- a/environment.yml +++ b/environment.yml @@ -37,6 +37,7 @@ dependencies: - jupyter-book~=1.0.0 # - jupyter-offlinenotebook~=0.2.2 # Outdated according to jupyterlab # - jupyter-collaboration~=2.0.1 + - jupyter-sshd-proxy~=0.2 - jupyterlab-favorites~=3.2.1 - jupyterlab-geojson~=3.4.0 - jupyterlab-git~=0.50.0 From 51a2f38a7fb249564fb303aaad33d788e8566b88 Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Fri, 9 Aug 2024 15:24:15 +1200 Subject: [PATCH 02/15] Include jupyter-offlinenotebook again New version 0.3.1 should work with JupyterLab 4.x now since https://github.com/manics/jupyter-offlinenotebook/pull/564 --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index a5559f0..47e67e5 100644 --- a/environment.yml +++ b/environment.yml @@ -35,8 +35,8 @@ dependencies: - ipywidgets~=8.1.1 - jupyter-ai~=2.20 - jupyter-book~=1.0.0 - # - jupyter-offlinenotebook~=0.2.2 # Outdated according to jupyterlab # - jupyter-collaboration~=2.0.1 + - jupyter-offlinenotebook~=0.3.1 - jupyter-sshd-proxy~=0.2 - jupyterlab-favorites~=3.2.1 - jupyterlab-geojson~=3.4.0 From aac1b3315aa715342ed90a416077f91df712f83a Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Thu, 15 Aug 2024 12:18:54 +1200 Subject: [PATCH 03/15] Add itables Pandas DataFrames as Interactive DataTables! Repo at https://github.com/mwouts/itables --- environment.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 47e67e5..f11f4d8 100644 --- a/environment.yml +++ b/environment.yml @@ -49,7 +49,8 @@ dependencies: # JupyterBook Addons - sphinx~=7.3 - sphinxcontrib-bibtex - # dashboards + # Interactive apps + - itables~=2.1 - voila~=0.5 # Core scientific python stack From a9b22e8e25dfe6a69c7a0730257d203fd1d069db Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Thu, 15 Aug 2024 12:21:10 +1200 Subject: [PATCH 04/15] Add stackstac Load a STAC collection into xarray with dask! Repo at https://github.com/gjoseph92/stackstac --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index f11f4d8..b49c733 100644 --- a/environment.yml +++ b/environment.yml @@ -105,6 +105,7 @@ dependencies: - earthaccess~=0.10.0 # Access datasets exposed via STAC - pystac-client~=0.8.3 + - stackstac~=0.5.1 # Access datasets exposed via intake catalogs - intake==0.6.6 - intake-esm>=2023.7.7 From 7247259edeeff07029e392efdeebc69ddb4e9984 Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Thu, 15 Aug 2024 12:39:47 +1200 Subject: [PATCH 05/15] Add pytorch (cpu build) Tensors and Dynamic neural networks in Python with strong GPU acceleration! Repo at https://github.com/pytorch/pytorch Need to bump `code-server` from 4.16 to 4.23 to resolve a conflict on `libuv`. --- environment.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index b49c733..2abc87f 100644 --- a/environment.yml +++ b/environment.yml @@ -28,7 +28,7 @@ dependencies: # VS Code support - jupyter-vscode-proxy~=0.5 - - code-server~=4.16.1 + - code-server~=4.23 # Jupyter tools - ipython~=8.17 @@ -82,6 +82,9 @@ dependencies: - plotly~=5.18.0 - seaborn~=0.13.2 # statistical plotting with matplotlib + # Machine Learning packages + - pytorch~=2.3.1=*cpu* + # Geospatial data packages - geopandas>=0.14.4 - pygmt~=0.12.0 From 1dfee093839fe55c7d33168e88953be3745cc42f Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Thu, 15 Aug 2024 12:43:56 +1200 Subject: [PATCH 06/15] Bump snowexsql from 0.4.1 to 0.5.0 Bumps [sqlparse](https://github.com/andialbrecht/sqlparse) from 0.4.1 to 0.5.0. - [Changelog](https://github.com/SnowEx/snowexsql/blob/master/CHANGELOG.md) - [Commits](https://github.com/SnowEx/snowexsql/compare/v0.4.1...v0.5.0) --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 2abc87f..3eeb40a 100644 --- a/environment.yml +++ b/environment.yml @@ -139,7 +139,7 @@ dependencies: - itslive~=0.3.2 - is2view~=0.0.8 - sliderule~=4.5 - - snowexsql~=0.4 + - snowexsql~=0.5 # Desktop tools whose versions are more recent on conda-forge than ubuntu - qgis~=3.38.0 From ce4f7c0e1f88ef479429241b5c6fa2ccb85708a4 Mon Sep 17 00:00:00 2001 From: actions-bot <58130806+actions-bot@users.noreply.github.com> Date: Thu, 15 Aug 2024 01:01:49 +0000 Subject: [PATCH 07/15] [condalock-command] autogenerated conda-lock files --- conda-linux-64.lock | 186 ++++---- conda-lock.yml | 1004 +++++++++++++++++++++++++------------------ 2 files changed, 682 insertions(+), 508 deletions(-) diff --git a/conda-linux-64.lock b/conda-linux-64.lock index 584ae7f..b6d25fc 100644 --- a/conda-linux-64.lock +++ b/conda-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 27e138f7645d5826e5003ba417fd7f954fa4a5e9e102ef4e9ca57d3094e25359 +# input_hash: 18bc50dfcf78b4108465f04d66f0120906ab769e98d5520e0a6f2669d3a549fb @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.7.4-hbcca054_0.conda#23ab7665c5f63cfb9f1f6195256daac6 @@ -19,18 +19,17 @@ https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.11-4_cp311.conda#d7 https://conda.anaconda.org/conda-forge/linux-64/syncthing-1.22.2-ha8f183a_0.conda#f2a4151b2779fa36317a3a8cfebd79c4 https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8 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-https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.23-h4ab18f5_0.conda#94d61ae2b2b701008a9d52ce6bbead27 +https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.25-h4bc722e_0.conda#8ae3ebc6f412a923466ae673a3b3953f https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553 -https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.32.3-h4bc722e_0.conda#7624e34ee6baebfc80d67bac76cc9d9d +https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.33.0-ha66036c_0.conda#b6927f788e85267beef6cbb292aaebdd https://conda.anaconda.org/conda-forge/linux-64/dav1d-1.2.1-hd590300_0.conda#418c6ca5929a611cbd69204907a83995 https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2#ac7bc6a654f8f41b352b38f4051135f8 -https://conda.anaconda.org/conda-forge/linux-64/gettext-tools-0.22.5-h59595ed_2.conda#985f2f453fb72408d6b6f1be0f324033 +https://conda.anaconda.org/conda-forge/linux-64/gettext-tools-0.22.5-he02047a_3.conda#fcd2016d1d299f654f81021e27496818 https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.2-hd590300_0.conda#3bf7b9fd5a7136126e0234db4b87c8b6 https://conda.anaconda.org/conda-forge/linux-64/json-c-0.17-h1220068_1.conda#f8f0f0c4338bad5c34a4e9e11460481d https://conda.anaconda.org/conda-forge/linux-64/jxrlib-1.1-hd590300_3.conda#5aeabe88534ea4169d4c49998f293d6c @@ -41,7 +40,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.20-hd590300_0.conda https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055 https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.2-h59595ed_0.conda#e7ba12deb7020dd080c6c70e7b6f6a3d https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3 -https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.22.5-h59595ed_2.conda#172bcc51059416e7ce99e7b528cede83 +https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.22.5-he02047a_3.conda#efab66b82ec976930b96d62a976de8e7 https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.1.0-hc5f4f2c_0.conda#6456c2620c990cd8dde2428a27ba0bc5 https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_2.conda#d66573916ffcf376178462f1b61c941e https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda#ea25936bb4080d843790b586850f82b8 @@ -56,7 +55,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libtasn1-4.19.0-h166bdaf_0.tar.b https://conda.anaconda.org/conda-forge/linux-64/libunistring-0.9.10-h7f98852_0.tar.bz2#7245a044b4a1980ed83196176b78b73a https://conda.anaconda.org/conda-forge/linux-64/libutf8proc-2.8.0-h166bdaf_0.tar.bz2#ede4266dc02e875fe1ea77b25dd43747 https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b -https://conda.anaconda.org/conda-forge/linux-64/libuv-1.46.0-hd590300_0.conda#d23c76f7e6dcd6243d1b6ef5e62d17d2 +https://conda.anaconda.org/conda-forge/linux-64/libuv-1.48.0-hd590300_0.conda#7e8b914b1062dd4386e3de4d82a3ead6 https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.4.0-hd590300_0.conda#b26e8aa824079e1be0294e7152ca4559 https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-h4ab18f5_1.conda#57d7dc60e9325e3de37ff8dffd18e814 @@ -68,6 +67,7 @@ https://conda.anaconda.org/conda-forge/linux-64/ocl-icd-2.3.2-hd590300_1.conda#c https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.1-h4bc722e_2.conda#e1b454497f9f7c1147fdde4b53f1b512 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036 https://conda.anaconda.org/conda-forge/linux-64/rav1e-0.6.6-he8a937b_2.conda#77d9955b4abddb811cb8ab1aa7d743e4 +https://conda.anaconda.org/conda-forge/linux-64/sleef-3.6.1-h3400bea_1.conda#ac00525f47c9fd0e0456a64caef525a6 https://conda.anaconda.org/conda-forge/linux-64/tzcode-2024a-h3f72095_0.conda#32146e34aaec3745a08b6f49af3f41b0 https://conda.anaconda.org/conda-forge/linux-64/x264-1!164.3095-h166bdaf_2.tar.bz2#6c99772d483f566d59e25037fea2c4b1 https://conda.anaconda.org/conda-forge/linux-64/xorg-kbproto-1.0.7-h7f98852_1002.tar.bz2#4b230e8381279d76131116660f5a241a @@ -81,10 +81,10 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-xproto-7.0.31-h7f98852_1007 https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0 https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h7f98852_2.tar.bz2#4cb3ad778ec2d5a7acbdf254eb1c42ae https://conda.anaconda.org/conda-forge/linux-64/aom-3.9.1-hac33072_0.conda#346722a0be40f6edc53f12640d301338 -https://conda.anaconda.org/conda-forge/linux-64/aws-c-cal-0.7.1-h87b94db_1.conda#2d76d2cfdcfe2d5c3883d33d8be919e7 -https://conda.anaconda.org/conda-forge/linux-64/aws-c-compression-0.2.18-he027950_7.conda#11e5cb0b426772974f6416545baee0ce -https://conda.anaconda.org/conda-forge/linux-64/aws-c-sdkutils-0.1.16-he027950_3.conda#adbf0c44ca88a3cded175cd809a106b6 -https://conda.anaconda.org/conda-forge/linux-64/aws-checksums-0.1.18-he027950_7.conda#95611b325a9728ed68b8f7eef2dd3feb +https://conda.anaconda.org/conda-forge/linux-64/aws-c-cal-0.7.3-h7970872_0.conda#902105f82c52abed505e1e1917c1c23b +https://conda.anaconda.org/conda-forge/linux-64/aws-c-compression-0.2.18-hc649ecc_8.conda#b72e4162acb0cf997185fc1da432a63e +https://conda.anaconda.org/conda-forge/linux-64/aws-c-sdkutils-0.1.19-hc649ecc_0.conda#f1d4b80dfc062bc55cecc20148eb925a +https://conda.anaconda.org/conda-forge/linux-64/aws-checksums-0.1.18-hc649ecc_8.conda#178504fd14f8486ce3153fa16371ceef https://conda.anaconda.org/conda-forge/linux-64/charls-2.4.2-h59595ed_0.conda#4336bd67920dd504cd8c6761d6a99645 https://conda.anaconda.org/conda-forge/linux-64/draco-1.5.7-h00ab1b0_0.conda#9cb0f7901c5279c48f1e3506c8d6cb94 https://conda.anaconda.org/conda-forge/linux-64/eigen-3.4.0-h00ab1b0_0.conda#b1b879d6d093f55dd40d58b5eb2f0699 @@ -101,7 +101,7 @@ https://conda.anaconda.org/conda-forge/linux-64/laz-perf-3.4.0-h00ab1b0_0.conda# https://conda.anaconda.org/conda-forge/linux-64/lerc-4.0.0-h27087fc_0.tar.bz2#76bbff344f0134279f225174e9064c8f https://conda.anaconda.org/conda-forge/linux-64/libabseil-20240116.2-cxx17_he02047a_1.conda#c48fc56ec03229f294176923c3265c05 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'>=12.12.0,<12.12.1.0a0' azure-storage-common-cpp: '>=12.7.0,<12.7.1.0a0' bzip2: '>=1.0.8,<2.0a0' - fmt: '>=11.0.1,<12.0a0' + fmt: '>=11.0.2,<12.0a0' libabseil: '>=20240116.2,<20240117.0a0' - libcurl: '>=8.9.0,<9.0a0' + libcurl: '>=8.9.1,<9.0a0' libgcc-ng: '>=12' - libgoogle-cloud: '>=2.26.0,<2.27.0a0' - libgoogle-cloud-storage: '>=2.26.0,<2.27.0a0' + libgoogle-cloud: '>=2.28.0,<2.29.0a0' + libgoogle-cloud-storage: '>=2.28.0,<2.29.0a0' libstdcxx-ng: '>=12' libwebp-base: '>=1.4.0,<2.0a0' libzlib: '>=1.3.1,<2.0a0' @@ -11160,10 +11325,10 @@ package: openssl: '>=3.3.1,<4.0a0' spdlog: '>=1.14.1,<1.15.0a0' zstd: '>=1.5.6,<1.6.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.25.0-h7d57ca9_4.conda + url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.25.0-h213c483_7.conda hash: - md5: 24e00e1e2389d23e18b552d5164eda45 - sha256: 12b3cb91b3f6d6e6aad16cb2fee8108b8df7707277ef2cf850c5fa9b3951f9f7 + md5: 9d8f1988a2d0420abf75e06497667594 + sha256: 3d60651162fc1bd178791ad8b877e5dbadfdb34c6786cc5308a83e375959f639 category: main optional: false - name: tinycss2 @@ -11489,18 +11654,19 @@ package: category: main optional: false - name: watchfiles - version: 0.22.0 + version: 0.23.0 manager: conda platform: linux-64 dependencies: + __glibc: '>=2.17,<3.0.a0' anyio: '>=3.0.0' libgcc-ng: '>=12' python: '>=3.11,<3.12.0a0' python_abi: 3.11.* - url: https://conda.anaconda.org/conda-forge/linux-64/watchfiles-0.22.0-py311h5ecf98a_0.conda + url: https://conda.anaconda.org/conda-forge/linux-64/watchfiles-0.23.0-py311hb3a8bbb_0.conda hash: - md5: 23e2f92fa88726f78dd6dacb5a7c0735 - sha256: a6cc738e4b3fd1835e8407299684d8a910145b5435eace5641bee6584c9c5b8a + md5: b56abe639786d1f789178c44091a999e + sha256: 7042f2a696014f38921cc8a4b3e2961270496d24ba4fd0490a555d001d613133 category: main optional: false - name: wcwidth @@ -11516,15 +11682,15 @@ package: category: main optional: false - name: webcolors - version: 24.6.0 + version: 24.8.0 manager: conda platform: linux-64 dependencies: python: '>=3.5' - url: https://conda.anaconda.org/conda-forge/noarch/webcolors-24.6.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/webcolors-24.8.0-pyhd8ed1ab_0.conda hash: - md5: 419f2f6cf90fc7a6feee657752cd0f7b - sha256: 6377de3bc05b80f25c5fe75f180a81fc8a6aa601d4b228161f75f78862d00a0f + md5: eb48b812eb4fbb9ff238a6651fdbbcae + sha256: ec71f97c332a7d328ae038990b8090cbfa772f82845b5d2233defd167b7cc5ac category: main optional: false - name: webencodings @@ -12154,15 +12320,15 @@ package: category: main optional: false - name: zipp - version: 3.19.2 + version: 3.20.0 manager: conda platform: linux-64 dependencies: python: '>=3.8' - url: https://conda.anaconda.org/conda-forge/noarch/zipp-3.19.2-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/zipp-3.20.0-pyhd8ed1ab_0.conda hash: - md5: 49808e59df5535116f6878b2a820d6f4 - sha256: e3e9c8501f581bfdc4700b83ea283395e237ec6b9b5cbfbedb556e1da6f4fdc9 + md5: 05b6bcb391b5be17374f7ad0aeedc479 + sha256: 72fa72af24006e37a9f027d6d9f407369edcbd9bbb93db299820eb63ea07e404 category: main optional: false - name: zlib From 4ab494710deaa01022b3db29bf7c304f4f9148c9 Mon Sep 17 00:00:00 2001 From: Jessica Scheick Date: Thu, 15 Aug 2024 10:14:36 -0400 Subject: [PATCH 08/15] update to latest version of icepyx --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 3eeb40a..eead6e5 100644 --- a/environment.yml +++ b/environment.yml @@ -135,7 +135,7 @@ dependencies: # Packages specific to cryo work - h5coro~=0.0.6 - - icepyx~=1.1.0 + - icepyx~=1.2.0 - itslive~=0.3.2 - is2view~=0.0.8 - sliderule~=4.5 From a55567661810f0d76aadcec33c8acbce0cc82fb3 Mon Sep 17 00:00:00 2001 From: Scott Henderson Date: Thu, 15 Aug 2024 10:42:24 -0600 Subject: [PATCH 09/15] Update environment.yml Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com> --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index eead6e5..8fdde2d 100644 --- a/environment.yml +++ b/environment.yml @@ -83,6 +83,7 @@ dependencies: - seaborn~=0.13.2 # statistical plotting with matplotlib # Machine Learning packages + - py-xgboost~=2.1.1=cpu* - pytorch~=2.3.1=*cpu* # Geospatial data packages From de0b7deca07a2fe54b4d1bce833328f706f25446 Mon Sep 17 00:00:00 2001 From: actions-bot <58130806+actions-bot@users.noreply.github.com> Date: Thu, 15 Aug 2024 16:46:17 +0000 Subject: [PATCH 10/15] [condalock-command] autogenerated conda-lock files --- conda-linux-64.lock | 19 ++++---- conda-lock.yml | 107 +++++++++++++++++++++++++++++++------------- 2 files changed, 86 insertions(+), 40 deletions(-) diff --git a/conda-linux-64.lock b/conda-linux-64.lock index b6d25fc..df972ed 100644 --- a/conda-linux-64.lock +++ b/conda-linux-64.lock @@ -1,8 +1,9 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 18bc50dfcf78b4108465f04d66f0120906ab769e98d5520e0a6f2669d3a549fb +# input_hash: 5733544582c3dd776eaa042af73391f35f93269a05b6f374c67af8509e716f88 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 +https://conda.anaconda.org/conda-forge/linux-64/_py-xgboost-mutex-2.0-cpu_0.tar.bz2#23b8f98a355030331f40d0245492f715 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.7.4-hbcca054_0.conda#23ab7665c5f63cfb9f1f6195256daac6 https://conda.anaconda.org/conda-forge/linux-64/dcw-gmt-2.2.0-ha770c72_0.conda#69326c2953b6b6628db1ce5e8cb0c7b1 https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2#0c96522c6bdaed4b1566d11387caaf45 @@ -122,6 +123,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libudunits2-2.2.28-h40f5838_3.co https://conda.anaconda.org/conda-forge/linux-64/libvorbis-1.3.7-h9c3ff4c_0.tar.bz2#309dec04b70a3cc0f1e84a4013683bc0 https://conda.anaconda.org/conda-forge/linux-64/libvpx-1.14.1-hac33072_0.conda#cde393f461e0c169d9ffb2fc70f81c33 https://conda.anaconda.org/conda-forge/linux-64/libxcb-1.15-h0b41bf4_0.conda#33277193f5b92bad9fdd230eb700929c +https://conda.anaconda.org/conda-forge/linux-64/libxgboost-2.1.1-cpu_h7afb2cf_1.conda#202fbc051f2337930bbf83b6156bbedc https://conda.anaconda.org/conda-forge/linux-64/libzip-1.10.1-h2629f0a_3.conda#ac79812548e7e8cf61f7b0abdef01d3b https://conda.anaconda.org/conda-forge/linux-64/libzopfli-1.0.3-h9c3ff4c_0.tar.bz2#c66fe2d123249af7651ebde8984c51c2 https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0 @@ -401,7 +403,7 @@ https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.14.3-nompi_hdf9ad27_105.c https://conda.anaconda.org/conda-forge/noarch/httplib2-0.22.0-pyhd8ed1ab_0.conda#75362ef538813bab1cfec370bb09e41f https://conda.anaconda.org/conda-forge/noarch/hypothesis-6.58.0-pyha770c72_0.conda#3c620afb1190d6ad43d90e01181e0567 https://conda.anaconda.org/conda-forge/noarch/importlib-metadata-8.2.0-pyha770c72_0.conda#c261d14fc7f49cdd403868998a18c318 -https://conda.anaconda.org/conda-forge/noarch/importlib_resources-6.4.0-pyhd8ed1ab_0.conda#c5d3907ad8bd7bf557521a1833cf7e6d +https://conda.anaconda.org/conda-forge/noarch/importlib_resources-6.4.2-pyhd8ed1ab_0.conda#ff64113bd700cf0f892ebf4b223e56aa https://conda.anaconda.org/conda-forge/noarch/jedi-0.19.1-pyhd8ed1ab_0.conda#81a3be0b2023e1ea8555781f0ad904a2 https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.4-pyhd8ed1ab_0.conda#7b86ecb7d3557821c649b3c31e3eb9f2 https://conda.anaconda.org/conda-forge/noarch/joblib-1.4.2-pyhd8ed1ab_0.conda#25df261d4523d9f9783bcdb7208d872f @@ -489,7 +491,7 @@ https://conda.anaconda.org/conda-forge/linux-64/grpcio-1.62.2-py311ha6695c7_0.co 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https://conda.anaconda.org/conda-forge/noarch/nbgitpuller-1.2.1-pyhd8ed1ab_0.conda#73abf90c19790f8d6c600b0aa152c932 https://conda.anaconda.org/conda-forge/noarch/pdal-2.7.2-hd8ed1ab_4.conda#492cfdb4fedefe26c8eec6270f0230cc https://conda.anaconda.org/conda-forge/noarch/intake-0.6.6-pyhd8ed1ab_0.tar.bz2#1dc29fb9182b0f3ce935a8bd4c341ed5 diff --git a/conda-lock.yml b/conda-lock.yml index 5d70d0a..29d1d59 100644 --- a/conda-lock.yml +++ b/conda-lock.yml @@ -13,7 +13,7 @@ version: 1 metadata: content_hash: - linux-64: 18bc50dfcf78b4108465f04d66f0120906ab769e98d5520e0a6f2669d3a549fb + linux-64: 5733544582c3dd776eaa042af73391f35f93269a05b6f374c67af8509e716f88 channels: - url: conda-forge used_env_vars: [] @@ -46,6 +46,17 @@ package: sha256: 84a66275da3a66e3f3e70e9d8f10496d807d01a9e4ec16cd2274cc5e28c478fc category: main optional: false +- name: _py-xgboost-mutex + version: '2.0' + manager: conda + platform: linux-64 + dependencies: {} + url: 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ee0568214516d9667b17ed9892743188e11ac16496fc3fa12812f02134c08761 category: main optional: false - name: awscrt @@ -2972,7 +2983,7 @@ package: category: main optional: false - name: google-api-python-client - version: 2.140.0 + version: 2.141.0 manager: conda platform: linux-64 dependencies: @@ -2982,10 +2993,10 @@ package: httplib2: '>=0.19.0,<1.dev0' python: '>=3.7' uritemplate: '>=3.0.1,<5' - url: https://conda.anaconda.org/conda-forge/noarch/google-api-python-client-2.140.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/google-api-python-client-2.141.0-pyhd8ed1ab_0.conda hash: - md5: 18a1ff7adb2cbd8e3f64fbfc62683622 - sha256: 2f34070a25417c5d9101b9aba51b6ad6a7a8006e85acc88faba50b5092adb97b + md5: cfb693b7c2ff080c5098530be5dcdeb4 + sha256: e7f191faeb8b3b0f44862b7fd677a40baa3ed15ef74bdf2fa8f26989e71d9aba category: main optional: false - name: google-auth @@ -3414,7 +3425,7 @@ package: category: main optional: false - name: icepyx - version: 1.1.0 + version: 1.2.0 manager: conda platform: linux-64 dependencies: @@ -3432,15 +3443,15 @@ package: matplotlib-base: '' numpy: '' pandas: '' - python: '>=3.0' + python: '>=3.7' requests: '' s3fs: '' shapely: '' xarray: '' - url: https://conda.anaconda.org/conda-forge/noarch/icepyx-1.1.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/icepyx-1.2.0-pyhd8ed1ab_0.conda hash: - md5: ff8bc8c307f06b126ee14277ff302362 - sha256: f034a374f3cf59f969b50dd43b3f539e8af1ea5105863c0b5854742398a5f53d + md5: a667c4ffc5bf7e345eba80467388f262 + sha256: 97ce18eb95f6ed3f6d6f5e180f4c34315bcbca436bee7a272a3c524987724f42 category: main optional: false - name: icu @@ -3552,16 +3563,16 @@ package: category: main optional: false - name: importlib-resources - version: 6.4.0 + version: 6.4.2 manager: conda platform: linux-64 dependencies: - importlib_resources: '>=6.4.0,<6.4.1.0a0' + importlib_resources: '>=6.4.2,<6.4.3.0a0' python: '>=3.8' - url: https://conda.anaconda.org/conda-forge/noarch/importlib-resources-6.4.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/importlib-resources-6.4.2-pyhd8ed1ab_0.conda hash: - md5: dcbadab7a68738a028e195ab68ab2d2e - sha256: 38db827f445ae437a15d50a94816ae67a48285d0700f736af3eb90800a71f079 + md5: af1f82a5ea4f16b1482165f93b11399d + sha256: ffcafd1e7a4590809739dd8b0cdd9a65e969168bde14202944aa575c6e773bbd category: main optional: false - name: importlib_metadata @@ -3577,16 +3588,16 @@ package: category: main optional: false - name: importlib_resources - version: 6.4.0 + version: 6.4.2 manager: conda platform: linux-64 dependencies: python: '>=3.8' zipp: '>=3.1.0' - url: https://conda.anaconda.org/conda-forge/noarch/importlib_resources-6.4.0-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/importlib_resources-6.4.2-pyhd8ed1ab_0.conda hash: - md5: c5d3907ad8bd7bf557521a1833cf7e6d - sha256: 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langchain-text-splitters @@ -7046,6 +7057,21 @@ package: sha256: 6ae68e0b86423ef188196fff6207ed0c8195dd84273cb5623b85aa08033a410c category: main optional: false +- name: libxgboost + version: 2.1.1 + manager: conda + platform: linux-64 + dependencies: + __glibc: '>=2.17,<3.0.a0' + _openmp_mutex: '>=4.5' + libgcc-ng: '>=12' + libstdcxx-ng: '>=12' + url: https://conda.anaconda.org/conda-forge/linux-64/libxgboost-2.1.1-cpu_h7afb2cf_1.conda + hash: + md5: 202fbc051f2337930bbf83b6156bbedc + sha256: cad07b3095c56494a34a1e27f99d0e895e0472cc72426ea992d1c9b1b7680c76 + category: main + optional: false - name: libxkbcommon version: 1.7.0 manager: conda @@ -9039,6 +9065,23 @@ package: sha256: dcfcb3cee1ae0a89729601582cc3edea20ba13c9493967a03a693c67567af0c8 category: main optional: false +- name: py-xgboost + version: 2.1.1 + manager: conda + platform: linux-64 + dependencies: + _py-xgboost-mutex: '2.0' + libxgboost: '>=2.1.1,<2.1.2.0a0' + numpy: '' + python: '>=3.8' + scikit-learn: '' + scipy: '' + url: https://conda.anaconda.org/conda-forge/noarch/py-xgboost-2.1.1-cpu_pyh684852a_1.conda + hash: + md5: c3d6463e06f66b1da11bab52d1850fe4 + sha256: 885a6bb954c5947ac2d94c639f5b4bbd694eb4c3922b8dcb4a5e6f48e050910f + category: main + optional: false - name: pyarrow version: 17.0.0 manager: conda From 08647a4d7f0d7683416f74aad5b5a2b5c7245636 Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Fri, 16 Aug 2024 15:51:45 +1200 Subject: [PATCH 11/15] Remove pytorch Keep the docker image small, xref https://github.com/CryoInTheCloud/hub-image/issues/118#issuecomment-2291417448 --- environment.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/environment.yml b/environment.yml index 8fdde2d..55e92db 100644 --- a/environment.yml +++ b/environment.yml @@ -84,7 +84,6 @@ dependencies: # Machine Learning packages - py-xgboost~=2.1.1=cpu* - - pytorch~=2.3.1=*cpu* # Geospatial data packages - geopandas>=0.14.4 From 2f8a365c32781c783647f145075cf1a36bf82fc3 Mon Sep 17 00:00:00 2001 From: Wei Ji <23487320+weiji14@users.noreply.github.com> Date: Fri, 16 Aug 2024 15:53:20 +1200 Subject: [PATCH 12/15] Add hydroeval HydroEval: An Evaluator for Streamflow Time Series In Python! Repo at https://github.com/thibhlln/hydroeval --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index 55e92db..edefc30 100644 --- a/environment.yml +++ b/environment.yml @@ -156,5 +156,6 @@ dependencies: # Not all packages will be available from conda-forge, we install from pip when we need to. - pip~=23.3.2 - pip: + - hydroeval==0.1.0 # Access linux desktop from inside JupyterHub - jupyter-desktop-server==0.1.3 From b3db6bb78f7be8d28452c8878da75aabd75918d3 Mon Sep 17 00:00:00 2001 From: actions-bot <58130806+actions-bot@users.noreply.github.com> Date: Fri, 16 Aug 2024 04:00:20 +0000 Subject: [PATCH 13/15] [condalock-command] autogenerated conda-lock files --- conda-linux-64.lock | 16 ++--- conda-lock.yml | 155 ++++++++++++++------------------------------ 2 files changed, 56 insertions(+), 115 deletions(-) diff --git a/conda-linux-64.lock b/conda-linux-64.lock index df972ed..68d8424 100644 --- a/conda-linux-64.lock +++ b/conda-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 5733544582c3dd776eaa042af73391f35f93269a05b6f374c67af8509e716f88 +# input_hash: 096cc83cb9582cb4b1621dfb7ed37608dffcf13651eb88ca302e2d5f2edc31bc @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/_py-xgboost-mutex-2.0-cpu_0.tar.bz2#23b8f98a355030331f40d0245492f715 @@ -20,8 +20,9 @@ https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.11-4_cp311.conda#d7 https://conda.anaconda.org/conda-forge/linux-64/syncthing-1.22.2-ha8f183a_0.conda#f2a4151b2779fa36317a3a8cfebd79c4 https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29 +https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.1.0-h77fa898_0.conda#ae061a5ed5f05818acdf9adab72c146d +https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2#fee5683a3f04bd15cbd8318b096a27ab -https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_kmp_llvm.tar.bz2#562b26ba2e19059551a811e72ab7f793 https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.1.0-h77fa898_0.conda#ca0fad6a41ddaef54a153b78eccb5037 https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.12-h4ab18f5_0.conda#7ed427f0871fd41cb1d9c17727c17589 https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2#d9c69a24ad678ffce24c6543a0176b00 @@ -68,7 +69,6 @@ https://conda.anaconda.org/conda-forge/linux-64/ocl-icd-2.3.2-hd590300_1.conda#c https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.1-h4bc722e_2.conda#e1b454497f9f7c1147fdde4b53f1b512 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036 https://conda.anaconda.org/conda-forge/linux-64/rav1e-0.6.6-he8a937b_2.conda#77d9955b4abddb811cb8ab1aa7d743e4 -https://conda.anaconda.org/conda-forge/linux-64/sleef-3.6.1-h3400bea_1.conda#ac00525f47c9fd0e0456a64caef525a6 https://conda.anaconda.org/conda-forge/linux-64/tzcode-2024a-h3f72095_0.conda#32146e34aaec3745a08b6f49af3f41b0 https://conda.anaconda.org/conda-forge/linux-64/x264-1!164.3095-h166bdaf_2.tar.bz2#6c99772d483f566d59e25037fea2c4b1 https://conda.anaconda.org/conda-forge/linux-64/xorg-kbproto-1.0.7-h7f98852_1002.tar.bz2#4b230e8381279d76131116660f5a241a @@ -175,7 +175,6 @@ https://conda.anaconda.org/conda-forge/linux-64/librttopo-1.1.0-hc670b87_16.cond https://conda.anaconda.org/conda-forge/linux-64/libthrift-0.20.0-hb90f79a_0.conda#9ce07c1750e779c9d4cc968047f78b0d https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.6.0-h1dd3fc0_3.conda#66f03896ffbe1a110ffda05c7a856504 https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.12.7-h4c95cb1_3.conda#0ac9aff6010a7751961c8e4b863a40e7 -https://conda.anaconda.org/conda-forge/linux-64/llvm-openmp-18.1.8-hf5423f3_1.conda#8782406a10201b67bd6476ca70cf92a8 https://conda.anaconda.org/conda-forge/linux-64/minizip-4.0.7-h401b404_0.conda#4474532a312b2245c5c77f1176989b46 https://conda.anaconda.org/conda-forge/linux-64/mpfr-4.2.1-h38ae2d0_2.conda#168e18a2bba4f8520e6c5e38982f5847 https://conda.anaconda.org/conda-forge/linux-64/mysql-libs-8.3.0-ha479ceb_5.conda#82776ee8145b9d1fd6546604de4b351d @@ -496,7 +495,7 @@ https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-8.2.0-hd8ed1ab_ https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2023.12.1-pyhd8ed1ab_0.conda#a0e4efb5f35786a05af4809a2fb1f855 https://conda.anaconda.org/conda-forge/noarch/jupyter_server_terminals-0.5.3-pyhd8ed1ab_0.conda#219b3833aa8ed91d47d1be6ca03f30be https://conda.anaconda.org/conda-forge/linux-64/kealib-1.5.3-hee9dde6_1.conda#c5b7b29e2b66107553d0366538257a51 -https://conda.anaconda.org/conda-forge/noarch/lazy_loader-0.4-pyhd8ed1ab_0.conda#a284ff318fbdb0dd83928275b4b6087c +https://conda.anaconda.org/conda-forge/noarch/lazy-loader-0.4-pyhd8ed1ab_1.conda#4809b9f4c6ce106d443c3f90b8e10db2 https://conda.anaconda.org/conda-forge/linux-64/libgcrypt-1.11.0-h4ab18f5_1.conda#14858a47d4cc995892e79f2b340682d7 https://conda.anaconda.org/conda-forge/linux-64/libgoogle-cloud-2.28.0-h26d7fe4_0.conda#2c51703b4d775f8943c08a361788131b https://conda.anaconda.org/conda-forge/linux-64/libnetcdf-4.9.2-nompi_h135f659_114.conda#a908e463c710bd6b10a9eaa89fdf003c @@ -506,7 +505,6 @@ https://conda.anaconda.org/conda-forge/linux-64/libspatialite-5.1.0-h15fa968_9.c https://conda.anaconda.org/conda-forge/noarch/mako-1.3.5-pyhd8ed1ab_0.conda#29fddbfa0e2361636a98de4f46ead2ac https://conda.anaconda.org/conda-forge/noarch/markdown-3.6-pyhd8ed1ab_0.conda#06e9bebf748a0dea03ecbe1f0e27e909 https://conda.anaconda.org/conda-forge/noarch/mdit-py-plugins-0.4.1-pyhd8ed1ab_0.conda#eb90dd178bcdd0260dfaa6e1cbccf042 -https://conda.anaconda.org/conda-forge/linux-64/mkl-2023.2.0-h84fe81f_50496.conda#81d4a1a57d618adf0152db973d93b2ad https://conda.anaconda.org/conda-forge/noarch/nose2-0.9.2-py_0.tar.bz2#6016c166523ee4955697bccbde8700bf https://conda.anaconda.org/conda-forge/linux-64/numpy-1.26.4-py311h64a7726_0.conda#a502d7aad449a1206efb366d6a12c52d https://conda.anaconda.org/conda-forge/linux-64/poppler-24.08.0-hb0d391f_0.conda#cbe41fbbe05b1f78182ced1f0defdf81 @@ -556,6 +554,7 @@ https://conda.anaconda.org/conda-forge/noarch/isoduration-20.11.0-pyhd8ed1ab_0.t https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.23.0-pyhd8ed1ab_0.conda#da304c192ad59975202859b367d0f6a2 https://conda.anaconda.org/conda-forge/noarch/jupyter_client-8.6.2-pyhd8ed1ab_0.conda#3cdbb2fa84490e5fd44c9f9806c0d292 https://conda.anaconda.org/conda-forge/noarch/jwcrypto-1.5.6-pyhd8ed1ab_0.conda#ed6cb792b0a0fa27b08a1babae4ef485 +https://conda.anaconda.org/conda-forge/noarch/lazy_loader-0.4-pyhd8ed1ab_1.conda#ec6f70b8a5242936567d4f886726a372 https://conda.anaconda.org/conda-forge/linux-64/libass-0.17.1-h8fe9dca_1.conda#c306fd9cc90c0585171167d09135a827 https://conda.anaconda.org/conda-forge/linux-64/libgdal-core-3.9.1-h8f9377d_10.conda#acb13917dca00666f11474e7972d9cb2 https://conda.anaconda.org/conda-forge/linux-64/libgoogle-cloud-storage-2.28.0-ha262f82_0.conda#9e7960f0b9ab3895ef73d92477c47dae @@ -573,7 +572,6 @@ https://conda.anaconda.org/conda-forge/linux-64/libopenvino-tensorflow-frontend- https://conda.anaconda.org/conda-forge/linux-64/libopenvino-tensorflow-lite-frontend-2024.2.0-he02047a_1.conda#e7f91b35e3aa7abe880fc9192a761fc0 https://conda.anaconda.org/conda-forge/linux-64/libsecret-0.18.8-h329b89f_2.tar.bz2#9d6698e3c9585a75156d86f7ef229093 https://conda.anaconda.org/conda-forge/linux-64/libsystemd0-255-h3516f8a_1.conda#3366af27f0b593544a6cd453c7932ac5 -https://conda.anaconda.org/conda-forge/linux-64/libtorch-2.3.1-cpu_mkl_h0bb0d08_100.conda#7ecacfd9230bc1e57801649fe3066206 https://conda.anaconda.org/conda-forge/linux-64/netcdf-fortran-4.6.1-nompi_h228c76a_104.conda#91bc3ac73308181d55a09d9e4aeb4496 https://conda.anaconda.org/conda-forge/linux-64/numba-0.60.0-py311h4bc866e_0.conda#e32a210e9caf97383c35685fd2343512 https://conda.anaconda.org/conda-forge/linux-64/numcodecs-0.12.1-py311h4332511_1.conda#887aa6096851eab5c34fe95ed1641591 @@ -602,7 +600,7 @@ https://conda.anaconda.org/conda-forge/linux-64/shapely-2.0.5-py311h5925939_0.co https://conda.anaconda.org/conda-forge/noarch/snuggs-1.4.7-pyhd8ed1ab_1.conda#5abeaa41ec50d4d1421a8bc8fbc93054 https://conda.anaconda.org/conda-forge/linux-64/tempest-remap-2.2.0-h13910d2_3.conda#7f10762cd62c8ad03323c4dc3ee544b1 https://conda.anaconda.org/conda-forge/linux-64/aws-sdk-cpp-1.11.379-he20dfa5_2.conda#25a12549e0aeeaa2718035c3e54ff520 -https://conda.anaconda.org/conda-forge/linux-64/awscli-2.17.30-py311h38be061_0.conda#d9153fec4456bff34ce1cff393a8f8ec +https://conda.anaconda.org/conda-forge/linux-64/awscli-2.17.31-py311h38be061_0.conda#47b73edaaa5bd2be974a62eb2a2c029a https://conda.anaconda.org/conda-forge/linux-64/azure-storage-files-datalake-cpp-12.11.0-h325d260_1.conda#11d926d1f4a75a1b03d1c053ca20424b https://conda.anaconda.org/conda-forge/noarch/bokeh-3.2.2-pyhd8ed1ab_0.conda#30488151f591379db656250b3f5fc0c6 https://conda.anaconda.org/conda-forge/noarch/boto3-1.34.131-pyhd8ed1ab_0.conda#16cbd51eb7f0fc40a88c636006437c85 @@ -635,7 +633,6 @@ https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.9.1-py311h74b4 https://conda.anaconda.org/conda-forge/noarch/nbformat-5.10.4-pyhd8ed1ab_0.conda#0b57b5368ab7fc7cdc9e3511fa867214 https://conda.anaconda.org/conda-forge/linux-64/netcdf4-1.7.1-nompi_py311h25b3b55_101.conda#936afeddfa3704eb834d0887b0838826 https://conda.anaconda.org/conda-forge/linux-64/pulseaudio-client-17.0-hb77b528_0.conda#07f45f1be1c25345faddb8db0de8039b -https://conda.anaconda.org/conda-forge/linux-64/pytorch-2.3.1-cpu_mkl_py311hcb16b95_100.conda#73df2c21364f6ab06556926cac7aff60 https://conda.anaconda.org/conda-forge/noarch/requests-oauthlib-2.0.0-pyhd8ed1ab_0.conda#87ce3f09ae7e1d3d0f748a1a634ea3b7 https://conda.anaconda.org/conda-forge/noarch/s3fs-2024.6.1-pyhd8ed1ab_0.conda#2120af180562f945c3fccc39972023da https://conda.anaconda.org/conda-forge/linux-64/scikit-learn-1.5.1-py311hd632256_0.conda#f3928b428ad924ecb8f0e9b71124ed7f @@ -804,5 +801,6 @@ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-htmlhelp-2.1.0-pyhd8 https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-2.0.0-pyhd8ed1ab_0.conda#d6e5ea5fe00164ac6c2dcc5d76a42192 https://conda.anaconda.org/conda-forge/noarch/sphinx-7.3.7-pyhd8ed1ab_0.conda#7b1465205e28d75d2c0e1a868ee00a67 https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0.conda#e507335cb4ca9cff4c3d0fa9cdab255e +# pip hydroeval @ https://files.pythonhosted.org/packages/4a/da/79c0aa3fc7ddea675a8006beb6c0824ae3430727e0f5141838161d0bfdda/hydroeval-0.1.0-py3-none-any.whl#sha256=522eca99468a0f2a7670232837a459cdde847d69a4c6bface98856e2e57123f5 # pip jupyter-desktop-server @ https://files.pythonhosted.org/packages/15/df/6f249cd3c3db684c8f9e67bc5470c4b593f882fbb03b1649f72ae7a26566/jupyter-desktop-server-0.1.3.tar.gz#sha256=5915a2dbbe250f59b3cc01859297b26b2e1836e03a5db4bfbfd438005649d7e4 # pip nbconvert @ https://files.pythonhosted.org/packages/b8/bb/bb5b6a515d1584aa2fd89965b11db6632e4bdc69495a52374bcc36e56cfa/nbconvert-7.16.4-py3-none-any.whl#sha256=05873c620fe520b6322bf8a5ad562692343fe3452abda5765c7a34b7d1aa3eb3 diff --git a/conda-lock.yml b/conda-lock.yml index 29d1d59..a657f1e 100644 --- a/conda-lock.yml +++ b/conda-lock.yml @@ -13,7 +13,7 @@ version: 1 metadata: content_hash: - linux-64: 5733544582c3dd776eaa042af73391f35f93269a05b6f374c67af8509e716f88 + linux-64: 096cc83cb9582cb4b1621dfb7ed37608dffcf13651eb88ca302e2d5f2edc31bc channels: - url: conda-forge used_env_vars: [] @@ -39,11 +39,11 @@ package: platform: linux-64 dependencies: _libgcc_mutex: '0.1' - llvm-openmp: '>=9.0.1' - url: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_kmp_llvm.tar.bz2 + libgomp: '>=7.5.0' + url: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 hash: - md5: 562b26ba2e19059551a811e72ab7f793 - sha256: 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-4892,7 +4892,7 @@ package: sha256: 4c130699ffcfddff7073ac079558d3e970b3b6198e096d586183e05d1ee714ac category: main optional: false -- name: lazy_loader +- name: lazy-loader version: '0.4' manager: conda platform: linux-64 @@ -4900,10 +4900,23 @@ package: importlib-metadata: '' packaging: '' python: '>=3.7' - url: https://conda.anaconda.org/conda-forge/noarch/lazy_loader-0.4-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/lazy-loader-0.4-pyhd8ed1ab_1.conda hash: - md5: a284ff318fbdb0dd83928275b4b6087c - sha256: 0d30db767c56d3f030069ab7c71320c8e34ca8d694c267b6c0d526e55a3bb929 + md5: 4809b9f4c6ce106d443c3f90b8e10db2 + sha256: c1ca8dc910d7c32d431d8ef4acdea8da2e876c62f096b99591f712fd62cf7269 + category: main + optional: false +- name: lazy_loader + version: '0.4' + manager: conda + platform: linux-64 + dependencies: + lazy-loader: '0.4' + python: '>=3.7' + url: https://conda.anaconda.org/conda-forge/noarch/lazy_loader-0.4-pyhd8ed1ab_1.conda + hash: + md5: ec6f70b8a5242936567d4f886726a372 + sha256: bf5a563f4e7d2bd5d3ec0644c0cb452b1e9e4ee68a221f6c9718872a22d4fa7a category: main optional: false - name: lcms2 @@ -5822,6 +5835,18 @@ package: sha256: 7470e664b780b91708bed356cc634874dfc3d6f17cbf884a1d6f5d6d59c09f91 category: main optional: false +- name: libgomp + version: 14.1.0 + manager: conda + platform: linux-64 + dependencies: + _libgcc_mutex: '0.1' + url: https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.1.0-h77fa898_0.conda + hash: + md5: ae061a5ed5f05818acdf9adab72c146d + sha256: 7699df61a1f6c644b3576a40f54791561f2845983120477a16116b951c9cdb05 + category: main + optional: false - name: libgoogle-cloud version: 2.28.0 manager: conda @@ -6875,27 +6900,6 @@ package: sha256: fc3b210f9584a92793c07396cb93e72265ff3f1fa7ca629128bf0a50d5cb15e4 category: main optional: false -- name: libtorch - version: 2.3.1 - manager: conda - platform: linux-64 - dependencies: - __glibc: '>=2.17,<3.0.a0' - _openmp_mutex: '>=4.5' - libabseil: '>=20240116.2,<20240117.0a0' - libcblas: '>=3.9.0,<4.0a0' - libgcc-ng: '>=12' - libprotobuf: '>=4.25.3,<4.25.4.0a0' - libstdcxx-ng: '>=12' - libuv: '>=1.48.0,<2.0a0' - mkl: '>=2023.2.0,<2024.0a0' - sleef: '>=3.5.1,<4.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/libtorch-2.3.1-cpu_mkl_h0bb0d08_100.conda - hash: - md5: 7ecacfd9230bc1e57801649fe3066206 - sha256: 0f9f896bace90b2eb0ebfcbeedd140be7743010985e47f74f2e38f0632bac5d2 - category: main - optional: false - name: libudunits2 version: 2.2.28 manager: conda @@ -7172,19 +7176,6 @@ package: sha256: aa99d44e8c83865026575a8af253141c53e0b3ab05f053befaa7757c8525064f category: main optional: false -- name: llvm-openmp - version: 18.1.8 - manager: conda - platform: linux-64 - dependencies: - libzlib: '>=1.3.1,<2.0a0' - zstd: '>=1.5.6,<1.6.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/llvm-openmp-18.1.8-hf5423f3_1.conda - hash: - md5: 8782406a10201b67bd6476ca70cf92a8 - sha256: 54b706eb3bdb1252d4fb3672d25eea4e7c66866c2a43418d895e30b34c9168ba - category: main - optional: false - name: llvmlite version: 0.43.0 manager: conda @@ -7526,20 +7517,6 @@ package: sha256: f95cb70007e3cc2ba44e17c29a056b499e6dadf08746706d0c817c8e2f47e05c category: main optional: false -- name: mkl - version: 2023.2.0 - manager: conda - platform: linux-64 - dependencies: - _openmp_mutex: '>=4.5' - llvm-openmp: '>=17.0.3' - tbb: 2021.* - url: https://conda.anaconda.org/conda-forge/linux-64/mkl-2023.2.0-h84fe81f_50496.conda - hash: - md5: 81d4a1a57d618adf0152db973d93b2ad - sha256: 046073737bf73153b0c39e343b197cdf0b7867d336962369407465a17ea5979a - category: main - optional: false - name: mock version: 5.1.0 manager: conda @@ -9755,37 +9732,6 @@ package: sha256: 8ef967fdcec46eaca3defbfce066f0a3dba162eeb7754ce78137ccf50452e67a category: main optional: false -- name: pytorch - version: 2.3.1 - manager: conda - platform: linux-64 - dependencies: - __glibc: '>=2.17,<3.0.a0' - _openmp_mutex: '>=4.5' - filelock: '' - fsspec: '' - jinja2: '' - libabseil: '>=20240116.2,<20240117.0a0' - libcblas: '>=3.9.0,<4.0a0' - libgcc-ng: '>=12' - libprotobuf: '>=4.25.3,<4.25.4.0a0' - libstdcxx-ng: '>=12' - libtorch: 2.3.1.* - libuv: '>=1.48.0,<2.0a0' - mkl: '>=2023.2.0,<2024.0a0' - networkx: '' - numpy: '>=1.19,<3' - python: '>=3.11,<3.12.0a0' - python_abi: 3.11.* - sleef: '>=3.5.1,<4.0a0' - sympy: '' - typing_extensions: '' - url: https://conda.anaconda.org/conda-forge/linux-64/pytorch-2.3.1-cpu_mkl_py311hcb16b95_100.conda - hash: - md5: 73df2c21364f6ab06556926cac7aff60 - sha256: 3f4fa6d2087bb2a2d03d11ca066c6b8f56605516fcf6508c569779996900c2f5 - category: main - optional: false - name: pytz version: '2024.1' manager: conda @@ -10686,20 +10632,6 @@ package: sha256: a85c38227b446f42c5b90d9b642f2c0567880c15d72492d8da074a59c8f91dd6 category: main optional: false -- name: sleef - version: 3.6.1 - manager: conda - platform: linux-64 - dependencies: - __glibc: '>=2.17,<3.0.a0' - _openmp_mutex: '>=4.5' - libgcc-ng: '>=12' - url: https://conda.anaconda.org/conda-forge/linux-64/sleef-3.6.1-h3400bea_1.conda - hash: - md5: ac00525f47c9fd0e0456a64caef525a6 - sha256: 4d841e582fef207a7323351ae267e36870b2dd0aa59d01b482f9ba342af77325 - category: main - optional: false - name: sliderule version: 4.5.3 manager: conda @@ -12415,6 +12347,17 @@ package: sha256: c558b9cc01d9c1444031bd1ce4b9cff86f9085765f17627a6cd85fc623c8a02b category: main optional: false +- name: hydroeval + version: 0.1.0 + manager: pip + platform: linux-64 + dependencies: + numpy: '*' + url: https://files.pythonhosted.org/packages/4a/da/79c0aa3fc7ddea675a8006beb6c0824ae3430727e0f5141838161d0bfdda/hydroeval-0.1.0-py3-none-any.whl + hash: + sha256: 522eca99468a0f2a7670232837a459cdde847d69a4c6bface98856e2e57123f5 + category: main + optional: false - name: jupyter-desktop-server version: 0.1.3 manager: pip From 3632ee2715c6af45f5267b78f2199759b5caf44d Mon Sep 17 00:00:00 2001 From: Scott Henderson Date: Fri, 16 Aug 2024 09:15:44 -0700 Subject: [PATCH 14/15] remove hydroeval --- environment.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/environment.yml b/environment.yml index edefc30..55e92db 100644 --- a/environment.yml +++ b/environment.yml @@ -156,6 +156,5 @@ dependencies: # Not all packages will be available from conda-forge, we install from pip when we need to. - pip~=23.3.2 - pip: - - hydroeval==0.1.0 # Access linux desktop from inside JupyterHub - jupyter-desktop-server==0.1.3 From 8193bfa7aa742f7784bbc60771ff6414e228b19d Mon Sep 17 00:00:00 2001 From: actions-bot <58130806+actions-bot@users.noreply.github.com> Date: Fri, 16 Aug 2024 16:19:40 +0000 Subject: [PATCH 15/15] [condalock-command] autogenerated conda-lock files --- conda-linux-64.lock | 47 ++++++----- conda-lock.yml | 184 +++++++++++++++++++++----------------------- 2 files changed, 110 insertions(+), 121 deletions(-) diff --git a/conda-linux-64.lock b/conda-linux-64.lock index 68d8424..1d47339 100644 --- a/conda-linux-64.lock +++ b/conda-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 096cc83cb9582cb4b1621dfb7ed37608dffcf13651eb88ca302e2d5f2edc31bc +# input_hash: 563db1c2ed81e241f7d18f01ab232270d91ce3761e8a0c2c5e1cb775ae337ec3 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/_py-xgboost-mutex-2.0-cpu_0.tar.bz2#23b8f98a355030331f40d0245492f715 @@ -16,7 +16,7 @@ https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-hf3520f5_7 https://conda.anaconda.org/conda-forge/linux-64/mpi-1.0-openmpi.tar.bz2#1dcc49e16749ff79ba2194fa5d4ca5e7 https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.3-ha770c72_0.conda#0a3af8b93ba501c6ba020deacc9df841 https://conda.anaconda.org/conda-forge/noarch/poppler-data-0.4.12-hd8ed1ab_0.conda#d8d7293c5b37f39b2ac32940621c6592 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https://conda.anaconda.org/conda-forge/noarch/langchain-core-0.2.32-pyhd8ed1ab_0.conda#8f5295bd7dd16cfb7e79ea3693f354f1 -https://conda.anaconda.org/conda-forge/linux-64/libarrow-17.0.0-h03aeac6_7_cpu.conda#25225d90d4fb125c5fbb6f87cc1aa309 +https://conda.anaconda.org/conda-forge/linux-64/libarrow-17.0.0-h8756180_8_cpu.conda#7fac330a6725172a912cc484a0f93825 https://conda.anaconda.org/conda-forge/linux-64/libgdal-kea-3.9.1-h2b45729_13.conda#99324ac77d1b52830e96889d6f87b4d5 https://conda.anaconda.org/conda-forge/linux-64/libgdal-netcdf-3.9.1-h94e7027_13.conda#d22f996a1eb2948b25897aa14e309bfe https://conda.anaconda.org/conda-forge/linux-64/libpdal-cpd-2.7.2-he02047a_5.conda#5caf2930f27744f264fd0f83d00e1d15 @@ -695,9 +695,9 @@ https://conda.anaconda.org/conda-forge/noarch/ipyvuetify-1.10.0-pyhd8ed1ab_0.con https://conda.anaconda.org/conda-forge/noarch/itslive-0.3.2-pyhd8ed1ab_1.conda#74f24fe79d242a8151a0aab0af338888 https://conda.anaconda.org/conda-forge/noarch/jupyter-cache-1.0.0-pyhd8ed1ab_0.conda#b667cf7b57baa559f628d374f017fa32 https://conda.anaconda.org/conda-forge/noarch/langchain-text-splitters-0.2.2-pyhd8ed1ab_0.conda#732d34d740166cb824724253fc814f6a -https://conda.anaconda.org/conda-forge/linux-64/libarrow-acero-17.0.0-he02047a_7_cpu.conda#64ba31c035986db4e46f98410607498e +https://conda.anaconda.org/conda-forge/linux-64/libarrow-acero-17.0.0-he02047a_8_cpu.conda#1151aa2dcc30d03c775b8233334f7d24 https://conda.anaconda.org/conda-forge/linux-64/libgdal-tiledb-3.9.1-h9d8aadb_13.conda#13310f0639fc1946e99e5c28662978c0 -https://conda.anaconda.org/conda-forge/linux-64/libparquet-17.0.0-haa1307c_7_cpu.conda#7448f406b12fc479eb5a7dbf485c0428 +https://conda.anaconda.org/conda-forge/linux-64/libparquet-17.0.0-haa1307c_8_cpu.conda#7a1e06213539848b4d4b624a0f6307b8 https://conda.anaconda.org/conda-forge/linux-64/libpdal-hdf-2.7.2-h069cff2_5.conda#bf98bc700f702a86fbbd126d4e79611c https://conda.anaconda.org/conda-forge/noarch/nbconvert-core-7.16.4-pyhd8ed1ab_1.conda#e2d2abb421c13456a9a9f80272fdf543 https://conda.anaconda.org/conda-forge/linux-64/pyarrow-core-17.0.0-py311h4510849_1_cpu.conda#228ea6517619bb88837e38d6cda37959 @@ -716,7 +716,7 @@ https://conda.anaconda.org/conda-forge/noarch/google-cloud-storage-2.18.2-pyhff2 https://conda.anaconda.org/conda-forge/noarch/hvplot-0.10.0-pyhd8ed1ab_0.conda#62e8362edc9bb3380e63186d4ad3e735 https://conda.anaconda.org/conda-forge/noarch/jupyter_server-2.14.2-pyhd8ed1ab_0.conda#ca23c71f70a7c7935b3d03f0f1a5801d https://conda.anaconda.org/conda-forge/noarch/langchain-0.2.14-pyhd8ed1ab_0.conda#5b3c746e9f8e779181c5d31b65a62269 -https://conda.anaconda.org/conda-forge/linux-64/libarrow-dataset-17.0.0-he02047a_7_cpu.conda#ad26d57360f2019840af562ddf3cb7d2 +https://conda.anaconda.org/conda-forge/linux-64/libarrow-dataset-17.0.0-he02047a_8_cpu.conda#7e06a68fda280d149d9a43bae84dd374 https://conda.anaconda.org/conda-forge/linux-64/libgdal-3.9.1-ha770c72_13.conda#65d475b84d3c1b7a49709aedd9b1233a https://conda.anaconda.org/conda-forge/linux-64/libpdal-tiledb-2.7.2-h38edd9e_5.conda#8cbe4cb53e2447e5e614aae3a02bb335 https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.9.1-py311h38be061_1.conda#41c69da88172782ae410c283e32608c7 @@ -736,7 +736,7 @@ https://conda.anaconda.org/conda-forge/noarch/jupyterlab-h5web-11.1.0-pyhd8ed1ab https://conda.anaconda.org/conda-forge/noarch/jupyterlab-myst-2.4.2-pyhd8ed1ab_0.conda#cc481204ea9c53cda7ac187efa0268a1 https://conda.anaconda.org/conda-forge/noarch/jupyterlab_server-2.27.3-pyhd8ed1ab_0.conda#af8239bf1ba7e8c69b689f780f653488 https://conda.anaconda.org/conda-forge/noarch/langchain-community-0.2.12-pyhd8ed1ab_0.conda#531058cf6a591227798370c116a046c1 -https://conda.anaconda.org/conda-forge/linux-64/libarrow-substrait-17.0.0-hc9a23c6_7_cpu.conda#a0207293ee147d04b46b44d60266d964 +https://conda.anaconda.org/conda-forge/linux-64/libarrow-substrait-17.0.0-hc9a23c6_8_cpu.conda#613b7846b912a62c4f3e50afc1635707 https://conda.anaconda.org/conda-forge/linux-64/libgdal-arrow-parquet-3.9.1-hcb48e43_13.conda#39eb6d0231fdbca711f9f881cef41f51 https://conda.anaconda.org/conda-forge/noarch/nbconvert-7.16.4-hd8ed1ab_1.conda#ab83e3b9ca2b111d8f332e9dc8b2170f https://conda.anaconda.org/conda-forge/noarch/notebook-shim-0.2.4-pyhd8ed1ab_0.conda#3d85618e2c97ab896b5b5e298d32b5b3 @@ -801,6 +801,5 @@ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-htmlhelp-2.1.0-pyhd8 https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-2.0.0-pyhd8ed1ab_0.conda#d6e5ea5fe00164ac6c2dcc5d76a42192 https://conda.anaconda.org/conda-forge/noarch/sphinx-7.3.7-pyhd8ed1ab_0.conda#7b1465205e28d75d2c0e1a868ee00a67 https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0.conda#e507335cb4ca9cff4c3d0fa9cdab255e -# pip hydroeval @ https://files.pythonhosted.org/packages/4a/da/79c0aa3fc7ddea675a8006beb6c0824ae3430727e0f5141838161d0bfdda/hydroeval-0.1.0-py3-none-any.whl#sha256=522eca99468a0f2a7670232837a459cdde847d69a4c6bface98856e2e57123f5 # pip jupyter-desktop-server @ https://files.pythonhosted.org/packages/15/df/6f249cd3c3db684c8f9e67bc5470c4b593f882fbb03b1649f72ae7a26566/jupyter-desktop-server-0.1.3.tar.gz#sha256=5915a2dbbe250f59b3cc01859297b26b2e1836e03a5db4bfbfd438005649d7e4 # pip nbconvert @ https://files.pythonhosted.org/packages/b8/bb/bb5b6a515d1584aa2fd89965b11db6632e4bdc69495a52374bcc36e56cfa/nbconvert-7.16.4-py3-none-any.whl#sha256=05873c620fe520b6322bf8a5ad562692343fe3452abda5765c7a34b7d1aa3eb3 diff --git a/conda-lock.yml b/conda-lock.yml index a657f1e..136eddb 100644 --- a/conda-lock.yml +++ b/conda-lock.yml @@ -13,7 +13,7 @@ version: 1 metadata: content_hash: - linux-64: 096cc83cb9582cb4b1621dfb7ed37608dffcf13651eb88ca302e2d5f2edc31bc + linux-64: 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sha256: 89f49970f60bd75a668273db036079615b3f8f4de4f67bf96e9e89d7977a1c73 category: main optional: false - name: aws-c-io @@ -512,13 +512,13 @@ package: dependencies: __glibc: '>=2.17,<3.0.a0' aws-c-cal: '>=0.7.3,<0.7.4.0a0' - aws-c-common: '>=0.9.25,<0.9.26.0a0' + aws-c-common: '>=0.9.27,<0.9.28.0a0' libgcc-ng: '>=12' s2n: '>=1.5.0,<1.5.1.0a0' - url: https://conda.anaconda.org/conda-forge/linux-64/aws-c-io-0.14.18-h7d46f39_3.conda + url: https://conda.anaconda.org/conda-forge/linux-64/aws-c-io-0.14.18-h0040ed1_5.conda hash: - md5: cf970c7fde2c61b82759f3d3c141b0ec - sha256: d0c7c5105a7fd48ad6b5419f20602232ec42fd057b99d005dfdd78ab231bc102 + md5: 2f6316f09b3152fecc2d34ab69508e6a + sha256: 834f5bdf6ade6df5f437f5c81f8d5e28c7a4d591e13d5e81cfadc2682dd773d4 category: main optional: false - name: aws-c-mqtt @@ -527,14 +527,14 @@ package: platform: linux-64 dependencies: __glibc: '>=2.17,<3.0.a0' - aws-c-common: '>=0.9.25,<0.9.26.0a0' + aws-c-common: '>=0.9.27,<0.9.28.0a0' aws-c-http: 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