diff --git a/roms_tools/setup/topography.py b/roms_tools/setup/topography.py index fe4c6c3f..b8bc505a 100644 --- a/roms_tools/setup/topography.py +++ b/roms_tools/setup/topography.py @@ -61,6 +61,10 @@ def _add_topography_and_mask( # fill enclosed basins with land mask = _fill_enclosed_basins(mask.values) + + # adjust mask boundaries by copying values from adjacent cells + mask = _handle_boundaries(mask) + ds["mask_rho"] = xr.DataArray(mask.astype(np.int32), dims=("eta_rho", "xi_rho")) ds["mask_rho"].attrs = { "long_name": "Mask at rho-points", @@ -233,10 +237,7 @@ def _smooth_topography_locally(h, hmin=5, rmax=0.2): ) # No gradient at the domain boundaries - h_log[0, :] = h_log[1, :] - h_log[-1, :] = h_log[-2, :] - h_log[:, 0] = h_log[:, 1] - h_log[:, -1] = h_log[:, -2] + h_log = _handle_boundaries(h_log) # Update h h = hmin * np.exp(h_log) @@ -252,6 +253,31 @@ def _smooth_topography_locally(h, hmin=5, rmax=0.2): return h +def _handle_boundaries(field): + """ + Adjust the boundaries of a 2D field by copying values from adjacent cells. + + Parameters + ---------- + field : numpy.ndarray or xarray.DataArray + A 2D array representing a field (e.g., topography or mask) whose boundary values + need to be adjusted. + + Returns + ------- + field : numpy.ndarray or xarray.DataArray + The input field with adjusted boundary values. + + """ + + field[0, :] = field[1, :] + field[-1, :] = field[-2, :] + field[:, 0] = field[:, 1] + field[:, -1] = field[:, -2] + + return field + + def _compute_rfactor(h): """ Computes slope parameter (or r-factor) r = |Delta h| / 2h in both horizontal grid directions. diff --git a/roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/0.0.0 b/roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/0.0.0 index 72356e57..bd107920 100644 Binary files a/roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/0.0.0 and 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within the bounds of the regional ERA5 data. """ grid = Grid( - nx=5, - ny=5, + nx=20, + ny=20, size_x=1800, size_y=2400, center_lon=-10, diff --git a/roms_tools/tests/test_setup/test_topography.py b/roms_tools/tests/test_setup/test_topography.py index e6e0306f..daef2508 100644 --- a/roms_tools/tests/test_setup/test_topography.py +++ b/roms_tools/tests/test_setup/test_topography.py @@ -56,3 +56,43 @@ def test_hmin_criterion(): assert grid.hmin == 10.0 assert np.less_equal(grid.hmin, grid.ds.h.min()) + + +def test_mask_topography_boundary(): + """ + Test that the mask and topography along the grid boundaries (north, south, east, west) + are identical to the adjacent inland cells. + """ + + # Create a grid with some land along the northern boundary + grid = Grid( + nx=10, ny=10, size_x=1000, size_y=1000, center_lon=-20, center_lat=60, rot=0 + ) + + # Toopography + np.testing.assert_array_equal( + grid.ds.h.isel(eta_rho=0).data, grid.ds.h.isel(eta_rho=1).data + ) + np.testing.assert_array_equal( + grid.ds.h.isel(eta_rho=-1).data, grid.ds.h.isel(eta_rho=-2).data + ) + np.testing.assert_array_equal( + grid.ds.h.isel(xi_rho=0).data, grid.ds.h.isel(xi_rho=1).data + ) + np.testing.assert_array_equal( + grid.ds.h.isel(xi_rho=-1).data, grid.ds.h.isel(xi_rho=-2).data + ) + + # Mask + np.testing.assert_array_equal( + grid.ds.mask_rho.isel(eta_rho=0).data, grid.ds.mask_rho.isel(eta_rho=1).data + ) + np.testing.assert_array_equal( + grid.ds.mask_rho.isel(eta_rho=-1).data, grid.ds.mask_rho.isel(eta_rho=-2).data + ) + np.testing.assert_array_equal( + grid.ds.mask_rho.isel(xi_rho=0).data, grid.ds.mask_rho.isel(xi_rho=1).data + ) + np.testing.assert_array_equal( + grid.ds.mask_rho.isel(xi_rho=-1).data, grid.ds.mask_rho.isel(xi_rho=-2).data + )