This repository contains scripts to process meteorological datasets in NetCDF file format. The general usage of the script (i.e., ./extract-dataset.sh) is as follows:
Usage:
extract-dataset [options...]
Script options:
-d, --dataset Meteorological forcing dataset of interest
-i, --dataset-dir=DIR The source path of the dataset file(s)
-v, --variable=var1[,var2[...]] Variables to process
-o, --output-dir=DIR Writes processed files to DIR
-s, --start-date=DATE The start date of the data
-e, --end-date=DATE The end date of the data
-l, --lat-lims=REAL,REAL Latitude's upper and lower bounds;
optional; within the [-90, +90] limits
-n, --lon-lims=REAL,REAL Longitude's upper and lower bounds;
optional; within the [-180, +180] limits
-a, --shape-file=PATH Path to the ESRI shapefile; optional
-m, --ensemble=ens1,[ens2,[...]] Ensemble members to process; optional
Leave empty to extract all ensemble members
-M, --model=model1,[model2,[...]] Models that are part of a dataset,
only applicable to climate datasets, optional
-S, --scenario=scn1,[scn2,[...]] Climate scenarios to process, only applicable
to climate datasets, optional
-j, --submit-job Submit the data extraction process as a job
on the SLURM system; optional
-k, --no-chunk No parallelization, recommended for small domains
-p, --prefix=STR Prefix prepended to the output files
-b, --parsable Parsable SLURM message mainly used
for chained job submissions
-c, --cache=DIR Path of the cache directory; optional
-E, [email protected] E-mail user when job starts, ends, or
fails; optional
-u, --account Digital Research Alliance of Canada's sponsor's
account name; optional, defaults to 'rpp-kshook'
-L, --list-datasets List all the available datasets and the
corresponding keywords for '--dataset' option
-V, --version Show version
-h, --help Show this screen and exit
| # | Dataset | Time Period | DOI | Description |
|---|---|---|---|---|
| 1 | GWF-NCAR WRF-CONUS I | Hourly (Oct 2000 - Dec 2013) | 10.1007/s00382-016-3327-9 | link |
| 2 | GWF-NCAR WRF-CONUS II1 | Hourly (Jan 1995 - Dec 2015) | 10.5065/49SN-8E08 | link |
| 3 | ECMWF ERA52 | Hourly (Jan 1950 - Dec 2020) | 10.24381/cds.adbb2d47 and link | link |
| 4 | ECCC RDRSv2.1 | Hourly (Jan 1980 - Dec 2018) | 10.5194/hess-25-4917-2021 | link |
| 5 | CCRN CanRCM4-WFDEI-GEM-CaPA | 3-Hourly (Jan 1951 - Dec 2100) | 10.5194/essd-12-629-2020 | link |
| 6 | CCRN WFDEI-GEM-CaPA | 3-Hourly (Jan 1979 - Dec 2016) | 10.20383/101.0111 | link |
| 7 | ORNL Daymet | Daily (Jan 1980 - Dec 2022)3 | 10.3334/ORNLDAAC/2129 | link |
| 8 | Alberta Gov Climate Dataset | Daily (Jan 1950 - Dec 2100) | 10.5194/hess-23-5151-201 | link |
| 9 | Ouranos ESPO-G6-R2 | Daily (Jan 1950 - Dec 2100) | 10.1038/s41597-023-02855-z | link |
| 10 | Ouranos MRCC5-CMIP6 | hourly (Jan 1950 - Dec 2100) | TBD | link |
| 11 | NASA NEX-GDDP-CMIP6 | Daily (Jan 1950 - Dec 2100) | 10.1038/s41597-022-01393-4 | link |
As an example, follow the code block below. Please remember that you MUST have access to Digital Research Alliance of Canada (DRA) clusters (specifically Graham) and have access to RDRSv2.1 model outputs. Also, remember to generate a Personal Access Token with GitHub in advance. Enter the following codes in your Graham shell as a test case:
foo@bar:~$ git clone https://github.com/kasra-keshavarz/datatool # clone the repository
foo@bar:~$ cd ./datatool/ # move to the repository's directory
foo@bar:~$ ./extract-dataset.sh -h # view the usage message
foo@bar:~$ ./extract-dataset.sh \
--dataset="rdrs" \
--dataset-dir="/project/rpp-kshook/Climate_Forcing_Data/meteorological-data/rdrsv2.1" \
--output-dir="$HOME/scratch/rdrs_outputs/" \
--start-date="2001-01-01 00:00:00" \
--end-date="2001-12-31 23:00:00" \
--lat-lims=49,51 \
--lon-lims=-117,-115 \
--variable="RDRS_v2.1_A_PR0_SFC,RDRS_v2.1_P_HU_09944" \
--cache='$SLURM_TMPDIR' \
--prefix="testing_";See the examples directory for real-world scripts for each meteorological dataset included in this repository.
The datasets logs are generated under the $HOME/.datatool directory,
only in cases where jobs are submitted to clusters' schedulers. If
processing is not submitted as a job, then the logs are printed on screen.
If you are considering any new dataset to be added to the data repository, and subsequently the associated scripts added here, you can open a new ticket on the Issues tab of the current repository. Or, you can make a Pull Request on this repository with your own script.
Please open a new ticket on the Issues tab of this repository for support.
Meteorological Data Processing Workflow - datatool
Copyright (C) 2022-2023, University of Saskatchewan
Copyright (C) 2023-2024, University of Calgary
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
Footnotes
-
For access to the files on Graham cluster, please contact Stephen O'Hearn. ↩
-
ERA5 data from 1950-1979 are based on ERA5 preliminary extenion and 1979 onwards are based on ERA5 1979-present. ↩
-
For the Peurto Rico domain of the dataset, data are available from January 1950 until December 2022. ↩