From 1d712e6f7f0aacc9c4560f17633b85bcbf43aed7 Mon Sep 17 00:00:00 2001 From: ljgarcia Date: Fri, 26 Jan 2024 11:40:34 +0100 Subject: [PATCH 1/2] Add LabProcess type page --- _data/type_versions.yaml | 6 + pages/_groups/LabProtocols.md | 2 +- pages/_types/LabProcess/0.1-DRAFT.html | 266 +++++++++++++++++++++++++ 3 files changed, 273 insertions(+), 1 deletion(-) create mode 100644 pages/_types/LabProcess/0.1-DRAFT.html diff --git a/_data/type_versions.yaml b/_data/type_versions.yaml index 073e55a6..e439fe71 100644 --- a/_data/type_versions.yaml +++ b/_data/type_versions.yaml @@ -61,6 +61,12 @@ Gene: latest_release: "0.3-RELEASE-2019_09_02" status: "active" +LabProcess: + name: "LabProcess" + latest_publication: "0.1-DRAFT" + latest_release: + status: "active" + LabProtocol: name: "LabProtocol" latest_publication: "0.5-DRAFT" diff --git a/pages/_groups/LabProtocols.md b/pages/_groups/LabProtocols.md index b1a1a602..64bf7cef 100755 --- a/pages/_groups/LabProtocols.md +++ b/pages/_groups/LabProtocols.md @@ -42,7 +42,7 @@ specifications: types: [ - 'LabProtocol' + 'LabProcess', 'LabProtocol' ] members: diff --git a/pages/_types/LabProcess/0.1-DRAFT.html b/pages/_types/LabProcess/0.1-DRAFT.html new file mode 100644 index 00000000..89673e66 --- /dev/null +++ b/pages/_types/LabProcess/0.1-DRAFT.html @@ -0,0 +1,266 @@ +--- +redirect_from: +- "devTypes/LabProcess/specification" +- "devTypes/LabProcess/specification/" +- "/devTypes/LabProcess/" +- "/LabProcess" +- "/types/LabProcess" +previous_version: +previous_release: +dateModified: 2024-01-26 +description: 'A LabProcess represents the specific application of a LabProtocol to some input (biological material or data) to produce some output (biological material or data).
This draft was prepared by Florian Wetzels and Lukas Weil, its specification is still up for discussion.' +hierarchy: +- Thing +- Action +gh_tasks: https://github.com/Bioschemas/bioschemas/labels/type%3A%20LabProcess +group: labprotocols +name: LabProcess +parent_type: Action +spec_type: Type +status: revision +version: '0.1-DRAFT' +--- +{% include type-start.html %} +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
PropertyExpected TypeDescription
+ New properties for {{page.name}} ( not yet + integrated in schema.org). +
+ parameterValue + + + PropertyValue  + + A parameter value of the experimental process, usually a key-value pair using ontology terms.
+ executesLabProtocol + + + LabProtocol  + + The lab protocol describes the experimental workflow and its parameters, which is instantiated by this process.
Properties from + Action
+ actionStatus + ActionStatusTypeIndicates the current disposition of the Action. +
+ agent + Organization  or
+ Person		The direct performer or driver of the action (animate or inanimate). E.g. John wrote a book. +
+ endTime + DateTime  or
+ Time		The endTime of something. For a reserved event or service (e.g. FoodEstablishmentReservation), the time that it is expected to end. For actions that span a period of time, when the action was performed. E.g. John wrote a book from January to December. For media, including audio and video, it's the time offset of the end of a clip within a larger file.

+ Note that Event uses startDate/endDate instead of startTime/endTime, even when describing dates with times. This situation may be clarified in future revisions. +
+ error + ThingFor failed actions, more information on the cause of the failure. +
+ instrument + ThingThe object that helped the agent perform the action. E.g. John wrote a book with a pen. +
+ location + Place  or
+ PostalAddress  or
+ Text  or
+ VirtualLocation		The location of, for example, where an event is happening, where an organization is located, or where an action takes place. +
+ object + ThingThe object upon which the action is carried out, whose state is kept intact or changed. Also known as the semantic roles patient, affected or undergoer (which change their state) or theme (which doesn't). E.g. John read a book. +
+ participant + Organization  or
+ Person		Other co-agents that participated in the action indirectly. E.g. John wrote a book with Steve. +
+ provider + Organization  or
+ Person		The service provider, service operator, or service performer; the goods producer. Another party (a seller) may offer those services or goods on behalf of the provider. A provider may also serve as the seller. + Supersedes + carrier. +
+ result + ThingThe result produced in the action. E.g. John wrote a book. +
+ startTime + DateTime  or
+ Time		The startTime of something. For a reserved event or service (e.g. FoodEstablishmentReservation), the time that it is expected to start. For actions that span a period of time, when the action was performed. E.g. John wrote a book from January to December. For media, including audio and video, it's the time offset of the start of a clip within a larger file.

+ Note that Event uses startDate/endDate instead of startTime/endTime, even when describing dates with times. This situation may be clarified in future revisions. +
+ target + EntryPoint  or
+ URL		Indicates a target EntryPoint, or url, for an Action. +
Properties from + Thing
+ additionalType + Text  or
+ URL		An additional type for the item, typically used for adding more specific types from external vocabularies in microdata syntax. This is a relationship between something and a class that the thing is in. Typically the value is a URI-identified RDF class, and in this case corresponds to the + use of rdf:type in RDF. Text values can be used sparingly, for cases where useful information can be added without their being an appropriate schema to reference. In the case of text values, the class label should follow the schema.org style guide. +
+ alternateName + TextAn alias for the item. +
+ description + Text  or
+ TextObject		A description of the item. +
+ disambiguatingDescription + TextA sub property of description. A short description of the item used to disambiguate from other, similar items. Information from other properties (in particular, name) may be necessary for the description to be useful for disambiguation. +
+ identifier + PropertyValue  or
+ Text  or
+ URL		The identifier property represents any kind of identifier for any kind of Thing, such as ISBNs, GTIN codes, UUIDs etc. Schema.org provides dedicated properties for representing many of these, either as textual strings or as URL (URI) links. See background notes for more details. +
+ image + ImageObject  or
+ URL		An image of the item. This can be a URL or a fully described ImageObject. +
+ mainEntityOfPage + CreativeWork  or
+ URL		Indicates a page (or other CreativeWork) for which this thing is the main entity being described. See background notes for details. +
Inverse property: + mainEntity +
+ name + TextThe name of the item. +
+ potentialAction + ActionIndicates a potential Action, which describes an idealized action in which this thing would play an 'object' role. +
+ sameAs + URLURL of a reference Web page that unambiguously indicates the item's identity. E.g. the URL of the item's Wikipedia page, Wikidata entry, or official website. +
+ subjectOf + CreativeWork  or
+ Event		A CreativeWork or Event about this Thing. +
Inverse property: + about +
+ url + URLURL of the item. +
+
\ No newline at end of file From 76c8e75b85054c1c8b3fcf1a3b34166bf5dbd44a Mon Sep 17 00:00:00 2001 From: Bert Droesbeke <44875756+bedroesb@users.noreply.github.com> Date: Mon, 29 Jan 2024 16:30:27 +0100 Subject: [PATCH 2/2] Update BertDroesbeke.md --- pages/_people/BertDroesbeke.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pages/_people/BertDroesbeke.md b/pages/_people/BertDroesbeke.md index c90c4ea9..df5f72ec 100644 --- a/pages/_people/BertDroesbeke.md +++ b/pages/_people/BertDroesbeke.md @@ -4,6 +4,6 @@ id: BertDroesbeke first-name: Bert last-name: Droesbeke collection: people -affiliation: VIB-UGent Center for Plant Systems Biology, +affiliation: VIB Data Core / ELIXIR Belgium orcid: 0000-0003-0522-5674 ---