From c85c40751d5cb2ac44a3f0f8a61c650da42e9c33 Mon Sep 17 00:00:00 2001
From: "Arian R. Jamasb" <arian@jamasb.io>
Date: Thu, 1 Aug 2024 19:22:28 +0200
Subject: [PATCH] tests: add tests with github actions

---
 .github/workflows/tests.yaml | 44 ++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)
 create mode 100644 .github/workflows/tests.yaml

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
new file mode 100644
index 0000000..2c22e66
--- /dev/null
+++ b/.github/workflows/tests.yaml
@@ -0,0 +1,44 @@
+name: tests
+
+on:
+  push:
+    paths-ignore:
+      - "README.md"
+      - "docs/**"
+      - "CHANGELOG.md"
+
+  pull_request:
+    paths-ignore:
+      - "README.md"
+      - "docs/*"
+      - "CHANGELOG.md"
+
+jobs:
+  build_cpu:
+    runs-on: ubuntu-latest
+    # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      matrix:
+        python-version: [3.7, 3.8, 3.9, "3.10", 3.11]
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+        # See: https://github.com/marketplace/actions/setup-miniconda
+      - name: Setup miniconda
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          miniforge-variant: Mambaforge
+          conda-channels: conda-forge
+          python-version: ${{ matrix.python-version }}
+          use-mamba: true
+      - name: Install BioPandas
+        run: pip install -e .
+      - name: Install Dev Dependencies
+        run: pip install mmtf-python numpy scipy pandas pytest looseversion importlib_resources
+      - name: Run unit tests and generate coverage report
+        run: pytest -s -