From 7cd70b4eabe9b7b455572adae96544de68023db3 Mon Sep 17 00:00:00 2001 From: Evgeny Karpulevich Date: Wed, 20 Mar 2024 23:54:29 +0300 Subject: [PATCH 1/2] Added container for seeksoultools v 1.2.0 --- seeksoultools/1.2.0/Dockerfile | 30 ++++++++++++++++++++++++++++++ seeksoultools/1.2.0/test-cmds.txt | 2 ++ 2 files changed, 32 insertions(+) create mode 100644 seeksoultools/1.2.0/Dockerfile create mode 100644 seeksoultools/1.2.0/test-cmds.txt diff --git a/seeksoultools/1.2.0/Dockerfile b/seeksoultools/1.2.0/Dockerfile new file mode 100644 index 00000000..190e86ca --- /dev/null +++ b/seeksoultools/1.2.0/Dockerfile @@ -0,0 +1,30 @@ +# Base Image +FROM continuumio/miniconda3:4.6.14 + +# Metadata +LABEL software="seeksoultools" \ + base_image="continuumio/miniconda3:4.6.14" \ + container="seeksoultools" \ + about.summary="Software developed by SEEKGENE for processing single-cell transcriptome data" \ + about.home="https://www.seekgene.com/fxrj" \ + about.documentation="http://seeksoul.seekgene.com/en/v1.2.0/index.html" \ + software.version="1.2.0" \ + version="1" \ + about.copyright="2023 SeekGene BioSciences" \ + about.license="Not in the SPDX list, free of charge" \ + about.license_file="/seeksoultools.1.2.0/lib/python3.10/site-packages/seeksoultools-1.2.0.dist-info/LICENSE" \ + about.tags="" + +# Maintainer +LABEL maintainer="Evgeny Karpulevich " + +SHELL ["/bin/bash", "-c"] + +RUN mkdir seeksoultools.1.2.0 && cd seeksoultools.1.2.0 && wget -c -O seeksoultools.1.2.0.tar.gz "https://seekgene-public.oss-cn-beijing.aliyuncs.com/software/seeksoultools/seeksoultools.1.2.0.tar.gz" && tar zxf seeksoultools.1.2.0.tar.gz; . /seeksoultools.1.2.0/bin/activate && /seeksoultools.1.2.0/bin/conda-unpack && apt-get clean && apt-get purge && rm -rf /var/lib/apt/lists/* /tmp/* seeksoultools.1.2.0.tar.gz + +USER biodocker + +ENV PATH /seeksoultools.1.2.0/bin:$PATH + +WORKDIR /data/ + diff --git a/seeksoultools/1.2.0/test-cmds.txt b/seeksoultools/1.2.0/test-cmds.txt new file mode 100644 index 00000000..635c4c49 --- /dev/null +++ b/seeksoultools/1.2.0/test-cmds.txt @@ -0,0 +1,2 @@ +seeksoultools --version +seeksoultools --help From 30b46651ed77bc8a19b29d7d3009e40bd98ec6e6 Mon Sep 17 00:00:00 2001 From: EKarpulevich Date: Fri, 29 Mar 2024 20:08:26 +0300 Subject: [PATCH 2/2] Update about.license field --- seeksoultools/1.2.0/Dockerfile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/seeksoultools/1.2.0/Dockerfile b/seeksoultools/1.2.0/Dockerfile index 190e86ca..789ee2c5 100644 --- a/seeksoultools/1.2.0/Dockerfile +++ b/seeksoultools/1.2.0/Dockerfile @@ -11,7 +11,7 @@ LABEL software="seeksoultools" \ software.version="1.2.0" \ version="1" \ about.copyright="2023 SeekGene BioSciences" \ - about.license="Not in the SPDX list, free of charge" \ + about.license="Custom License" \ about.license_file="/seeksoultools.1.2.0/lib/python3.10/site-packages/seeksoultools-1.2.0.dist-info/LICENSE" \ about.tags=""